Acta Horticulturae Sinica ›› 2023, Vol. 50 ›› Issue (12): 2551-2567.doi: 10.16420/j.issn.0513-353x.2023-0010
• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles
HAN Kai1, LUO Yaoxing2, JIAO Xiaobo2, YAN Zhao1, NAOMI Abe-Kanoh3, MA Xiaohe4,*(), JI Wei2,3,*(
)
Received:
2023-01-20
Revised:
2023-06-21
Online:
2023-12-25
Published:
2023-12-29
Contact:
MA Xiaohe, JI Wei
HAN Kai, LUO Yaoxing, JIAO Xiaobo, YAN Zhao, NAOMI Abe-Kanoh, MA Xiaohe, JI Wei. Preliminary Study on the Mechanism of Flower Organ Development and Sex Formation in Different Grapes[J]. Acta Horticulturae Sinica, 2023, 50(12): 2551-2567.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2023-0010
Fig. 1 Dynamic development of three sexual organs of grape S1,S2,and S3 represent early bud stage,large bud stage and blooming stage,respectively. The same below.
样品 Sample | 测序数量 Clean reads | 基数 Clean bases | GC含量/% GC content | Q30/% | 映射数量 Mapped reads | 唯一映射数量 Unigene mapped reads | 多重映射数量 Multiple mapped reads |
---|---|---|---|---|---|---|---|
FS1-1 | 35 072 390 | 10 460 784 892 | 46.92 | 89.21 | 21 544 969 (61.43%) | 21 151 539 (60.31%) | 394 306 (1.12%) |
FS1-2 | 33 289 127 | 9 934 504 758 | 46.41 | 89.08 | 20 990 124 (63.06%) | 20 598 256 (61.88%) | 393 287 (1.18%) |
FS2-1 | 31 912 591 | 9 508 367 080 | 47.16 | 90.12 | 18 860 341 (59.10%) | 18 486 007 (57.93%) | 373 997 (1.17%) |
FS2-2 | 24 143 185 | 7 189 409 044 | 46.54 | 91.20 | 15 456 467 (64.02%) | 15 134 525 (62.69%) | 321 559 (1.33%) |
FS3-1 | 34 577 903 | 10 309 343 968 | 46.29 | 89.46 | 21 528 202 (62.26%) | 21 096 785 (61.01%) | 432 896 (1.25%) |
FS3-2 | 27 251 953 | 8 127 212 828 | 46.64 | 89.59 | 16 645 493 (61.08%) | 16 324 467 (59.90%) | 320 618 (1.18%) |
MS1-1 | 34 721 924 | 10 360 502 876 | 46.44 | 93.05 | 21 968 561 (63.27%) | 21 530 344 (62.01%) | 438 215 (1.26%) |
MS1-2 | 35 750 397 | 10 661 711 784 | 46.13 | 92.69 | 22 837 354 (63.88%) | 22 373 027 (62.58%) | 462 573 (1.29%) |
MS2-1 | 31 178 630 | 9 301 801 016 | 47.21 | 92.29 | 18 516 988 (59.39%) | 18 086 723 (58.01%) | 429 967 (1.38%) |
MS2-2 | 31 213 860 | 9 291 852 870 | 46.68 | 93.17 | 17 701 380 (56.71%) | 18 898 728 (60.55%) | 439 769 (1.41%) |
MS3-1 | 34 905 725 | 10 394 750 300 | 46.69 | 89.27 | 20 032 396 (57.39%) | 19 597 741 (56.14%) | 434 693 (1.25%) |
MS3-2 | 38 482 329 | 11 487 839 784 | 46.83 | 88.74 | 21 823 329 (56.71%) | 21 337 468 (55.45%) | 487 457 (1.27%) |
HS1-1 | 34 651 419 | 10 338 334 932 | 46.33 | 89.44 | 23 854 037 (68.84%) | 23 413 262 (67.57%) | 441 714 (1.27%) |
HS1-2 | 32 555 738 | 9 699 684 606 | 46.24 | 89.74 | 22 675 072 (69.65%) | 22 257 892 (68.37%) | 415 710 (1.28%) |
HS2-1 | 37 521 061 | 11 191 155 650 | 46.40 | 89.56 | 25 413 015 (67.73%) | 24 914 342 (66.40%) | 498 766 (1.33%) |
HS2-2 | 36 299 424 | 10 830 928 788 | 46.63 | 89.57 | 23 993 919 (66.10%) | 23 533 171 (64.83%) | 460 084 (1.27%) |
HS3-1 | 22 028 667 | 6 563 311 378 | 46.32 | 89.03 | 15 005 928 (68.12%) | 14 726 502 (66.85%) | 279 417 (1.27%) |
HS3-2 | 26 015 766 | 7 755 108 802 | 46.26 | 89.15 | 17 789 581 (68.38%) | 17 444 441 (67.05%) | 344 719 (1.33%) |
Table 1 Reads statistics based on RNA-Seq data of 18 libraries
样品 Sample | 测序数量 Clean reads | 基数 Clean bases | GC含量/% GC content | Q30/% | 映射数量 Mapped reads | 唯一映射数量 Unigene mapped reads | 多重映射数量 Multiple mapped reads |
---|---|---|---|---|---|---|---|
FS1-1 | 35 072 390 | 10 460 784 892 | 46.92 | 89.21 | 21 544 969 (61.43%) | 21 151 539 (60.31%) | 394 306 (1.12%) |
FS1-2 | 33 289 127 | 9 934 504 758 | 46.41 | 89.08 | 20 990 124 (63.06%) | 20 598 256 (61.88%) | 393 287 (1.18%) |
FS2-1 | 31 912 591 | 9 508 367 080 | 47.16 | 90.12 | 18 860 341 (59.10%) | 18 486 007 (57.93%) | 373 997 (1.17%) |
FS2-2 | 24 143 185 | 7 189 409 044 | 46.54 | 91.20 | 15 456 467 (64.02%) | 15 134 525 (62.69%) | 321 559 (1.33%) |
FS3-1 | 34 577 903 | 10 309 343 968 | 46.29 | 89.46 | 21 528 202 (62.26%) | 21 096 785 (61.01%) | 432 896 (1.25%) |
FS3-2 | 27 251 953 | 8 127 212 828 | 46.64 | 89.59 | 16 645 493 (61.08%) | 16 324 467 (59.90%) | 320 618 (1.18%) |
MS1-1 | 34 721 924 | 10 360 502 876 | 46.44 | 93.05 | 21 968 561 (63.27%) | 21 530 344 (62.01%) | 438 215 (1.26%) |
MS1-2 | 35 750 397 | 10 661 711 784 | 46.13 | 92.69 | 22 837 354 (63.88%) | 22 373 027 (62.58%) | 462 573 (1.29%) |
MS2-1 | 31 178 630 | 9 301 801 016 | 47.21 | 92.29 | 18 516 988 (59.39%) | 18 086 723 (58.01%) | 429 967 (1.38%) |
MS2-2 | 31 213 860 | 9 291 852 870 | 46.68 | 93.17 | 17 701 380 (56.71%) | 18 898 728 (60.55%) | 439 769 (1.41%) |
MS3-1 | 34 905 725 | 10 394 750 300 | 46.69 | 89.27 | 20 032 396 (57.39%) | 19 597 741 (56.14%) | 434 693 (1.25%) |
MS3-2 | 38 482 329 | 11 487 839 784 | 46.83 | 88.74 | 21 823 329 (56.71%) | 21 337 468 (55.45%) | 487 457 (1.27%) |
HS1-1 | 34 651 419 | 10 338 334 932 | 46.33 | 89.44 | 23 854 037 (68.84%) | 23 413 262 (67.57%) | 441 714 (1.27%) |
HS1-2 | 32 555 738 | 9 699 684 606 | 46.24 | 89.74 | 22 675 072 (69.65%) | 22 257 892 (68.37%) | 415 710 (1.28%) |
HS2-1 | 37 521 061 | 11 191 155 650 | 46.40 | 89.56 | 25 413 015 (67.73%) | 24 914 342 (66.40%) | 498 766 (1.33%) |
HS2-2 | 36 299 424 | 10 830 928 788 | 46.63 | 89.57 | 23 993 919 (66.10%) | 23 533 171 (64.83%) | 460 084 (1.27%) |
HS3-1 | 22 028 667 | 6 563 311 378 | 46.32 | 89.03 | 15 005 928 (68.12%) | 14 726 502 (66.85%) | 279 417 (1.27%) |
HS3-2 | 26 015 766 | 7 755 108 802 | 46.26 | 89.15 | 17 789 581 (68.38%) | 17 444 441 (67.05%) | 344 719 (1.33%) |
Fig. 6 Statistics of differentially expressed gene numbers among the three types of floral organ at the same stage F,H,and M represent female,hermaphrodite and male.
Fig. 7 GO(biological process)enrichment of differentially expressed genes involved in three types of grape flower development at the same stage(top 10) The numbers on the right indicate the significantly enriched genes.
Fig. 8 Hierarchical clustering tree of differentially expressed genes involved in floral organ forming at three development stages in female(F),hermaphrodite(H)and male(M) Genes presented are involved in the formation of sepals,petal,stamen,gynoecium and carpel.
Fig. 9 Hierarchical clustering tree of differentially expressed genes involved in the flowering pathways of grape flower with three sexes in early bud stage(S1),large bud stage(S2)and blooming stage(S3) Genes shown are involved in photoperiod pathway,vernalization pathway,autonomuspathway,and plant hormone signal transduction pathways.
激素 Hormones | 始蕾期 Early bud stage | 大蕾期 Large bud stage | 盛花期Blooming stage | |||
---|---|---|---|---|---|---|
上调Up | 下调Down | 上调Up | 下调Down | 上调Up | 下调Down | |
Auxin | 116 | 150 | 149 | 193 | 204 | 233 |
GA | 46 | 44 | 50 | 54 | 86 | 72 |
ZT | 15 | 11 | 16 | 14 | 14 | 19 |
ABA | 156 | 187 | 191 | 258 | 232 | 336 |
BR | 54 | 81 | 82 | 89 | 121 | 107 |
Table 2 Number of hormone-related genes that are up- and down-regulated in unisexual flowers
激素 Hormones | 始蕾期 Early bud stage | 大蕾期 Large bud stage | 盛花期Blooming stage | |||
---|---|---|---|---|---|---|
上调Up | 下调Down | 上调Up | 下调Down | 上调Up | 下调Down | |
Auxin | 116 | 150 | 149 | 193 | 204 | 233 |
GA | 46 | 44 | 50 | 54 | 86 | 72 |
ZT | 15 | 11 | 16 | 14 | 14 | 19 |
ABA | 156 | 187 | 191 | 258 | 232 | 336 |
BR | 54 | 81 | 82 | 89 | 121 | 107 |
基因ID Gene ID | 说明 Description | log2FC | ||
---|---|---|---|---|
始蕾期 Early bud stage | 大蕾期 Large bud stage | 盛花期 Blooming stage | ||
VIT_00s1203g00010 | 类生长素反应因子6 Auxin response factor 6-like | 7.45 | 6.59 | 7.57 |
VIT_13s0019g01160 | 类黄烷酮4-还原酶Flavanone 4-reductase-like | 3.32 | 3.60 | 5.68 |
VIT_11s0016g02110 | 细胞分裂素脱氢酶3 Cytokinin dehydrogenase 3 | 2.56 | 6.21 | 6.26 |
VIT_16s0098g01080 | 生长调节因子2 Growth-regulating factor 2 | 1.17 | 2.73 | 1.86 |
VIT_16s0022g02310 | 赤霉素氧化酶20 Gibberellin 20-oxidase | 1.02 | 2.37 | 5.61 |
VIT_00s0634g00030 | LRR受体丝氨酸/苏氨酸蛋白激酶 LRR receptor-like serine/threonine-protein kinase | -1.72 | -1.94 | -3.15 |
VIT_17s0000g09790 | BTB/POZ域;TAZ锌指 BTB/POZ domain;TAZ zinc finger | -1.92 | -1.85 | -1.83 |
VIT_06s0004g00020 | 含有NAC结构域的蛋白质68 NAC domain-containing protein 68 | -2.50 | -3.10 | -3.64 |
VIT_11s0052g00870 | 生长素响应蛋白IAA33 Auxin-responsive protein IAA33 | -3.20 | -5.68 | -6.74 |
VIT_00s0324g00100 | UDP糖基转移酶85A2 UDP-glycosyltransferase 85A2 | -4.63 | -7.99 | -6.91 |
Table 3 Hormone-related genes that are up- and down-regulated in unisexual flowers
基因ID Gene ID | 说明 Description | log2FC | ||
---|---|---|---|---|
始蕾期 Early bud stage | 大蕾期 Large bud stage | 盛花期 Blooming stage | ||
VIT_00s1203g00010 | 类生长素反应因子6 Auxin response factor 6-like | 7.45 | 6.59 | 7.57 |
VIT_13s0019g01160 | 类黄烷酮4-还原酶Flavanone 4-reductase-like | 3.32 | 3.60 | 5.68 |
VIT_11s0016g02110 | 细胞分裂素脱氢酶3 Cytokinin dehydrogenase 3 | 2.56 | 6.21 | 6.26 |
VIT_16s0098g01080 | 生长调节因子2 Growth-regulating factor 2 | 1.17 | 2.73 | 1.86 |
VIT_16s0022g02310 | 赤霉素氧化酶20 Gibberellin 20-oxidase | 1.02 | 2.37 | 5.61 |
VIT_00s0634g00030 | LRR受体丝氨酸/苏氨酸蛋白激酶 LRR receptor-like serine/threonine-protein kinase | -1.72 | -1.94 | -3.15 |
VIT_17s0000g09790 | BTB/POZ域;TAZ锌指 BTB/POZ domain;TAZ zinc finger | -1.92 | -1.85 | -1.83 |
VIT_06s0004g00020 | 含有NAC结构域的蛋白质68 NAC domain-containing protein 68 | -2.50 | -3.10 | -3.64 |
VIT_11s0052g00870 | 生长素响应蛋白IAA33 Auxin-responsive protein IAA33 | -3.20 | -5.68 | -6.74 |
VIT_00s0324g00100 | UDP糖基转移酶85A2 UDP-glycosyltransferase 85A2 | -4.63 | -7.99 | -6.91 |
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