Acta Horticulturae Sinica ›› 2023, Vol. 50 ›› Issue (8): 1609-1621.doi: 10.16420/j.issn.0513-353x.2022-0516
• Genetic & Breeding·Germplasm Resources·Molecular Biology • Next Articles
LI Songqi, LI Xufei, LI Min, LIU Hainan, PEI Maosong, WEI Tonglu, GUO Dalong, YU Yihe*()
Received:
2023-03-24
Revised:
2023-04-21
Online:
2023-08-25
Published:
2023-08-23
Contact:
YU Yihe
LI Songqi, LI Xufei, LI Min, LIU Hainan, PEI Maosong, WEI Tonglu, GUO Dalong, YU Yihe. Cloning,Expression and Promoter Activity Analysis of VlRRA1 Gene in Grape[J]. Acta Horticulturae Sinica, 2023, 50(8): 1609-1621.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2022-0516
用途 Use | 引物名称 Name of primer | 引物序列(5′-3′) Primer sequence |
---|---|---|
VlRRA1克隆 | VlRRA1-F | atggccatggaggccgaattcATGGAGATAAGCGGTGTTCT |
Cloning of VlRRA1 sequence | VlRRA1-R | atgcggccgctgcaggaattcCTAATCACATGTGGAGGTTT |
实时荧光定量PCR | qPCR-VlRRA1-F | GACAGATGTTTGGAGGAAGGTG |
qRT-PCR | qPCR-VlRRA1-R | TGAAGATATGGACGGTGGTGAT |
VlRRA1启动子克隆 | ProVlRRA1-F | tgggcccggcgcgccaagcttGGTCATTTCATTGCTTTCCTCTC |
Cloning of VlRRA1 promoter sequence | ProVlRRA1-R | ggtggactcctcttagaattcACAGGGTTCCGTGATTCTGTG |
Table 1 Sequence of primers and application
用途 Use | 引物名称 Name of primer | 引物序列(5′-3′) Primer sequence |
---|---|---|
VlRRA1克隆 | VlRRA1-F | atggccatggaggccgaattcATGGAGATAAGCGGTGTTCT |
Cloning of VlRRA1 sequence | VlRRA1-R | atgcggccgctgcaggaattcCTAATCACATGTGGAGGTTT |
实时荧光定量PCR | qPCR-VlRRA1-F | GACAGATGTTTGGAGGAAGGTG |
qRT-PCR | qPCR-VlRRA1-R | TGAAGATATGGACGGTGGTGAT |
VlRRA1启动子克隆 | ProVlRRA1-F | tgggcccggcgcgccaagcttGGTCATTTCATTGCTTTCCTCTC |
Cloning of VlRRA1 promoter sequence | ProVlRRA1-R | ggtggactcctcttagaattcACAGGGTTCCGTGATTCTGTG |
顺式作用元件 | 序列 | 功能 | 数量 |
---|---|---|---|
cis-acting element | Sequence | Function | Number |
CAAT-box | CCAAT | 启动子和增强子区域常见的顺式作用元件 | 14 |
Common cis-acting element in promoter and enhancer regions | |||
TATA-box | TATAAAT/TATA | 转录起始位点周围 - 30左右的核心启动子元件 | 28 |
Core promoter element around -30 of transcription start | |||
TCA-element | CCATCTTTTT | 参与水杨酸响应的顺式作用元件 | 1 |
cis-Acting element involved in salicylic acid responsiveness | |||
TGACG/CGTCA-motif | TGACG/CGTCA | 参与茉莉酸甲酯响应的顺式作用调节元件 | 4 |
cis-Acting regulatory element involved in the MeJA-responsiveness | |||
ARE | AAACCA | 厌氧诱导的关键顺式作用调节元件 | 2 |
cis-Acting regulatory element essential for the anaerobic induction | |||
LTR | CCGAAA | 参与低温响应的顺式作用元件 | 1 |
cis-Acting element involved in low-temperature responsiveness | |||
MBS | CAACTG | 参与干旱诱导的MYB结合位点 | 2 |
MYB binding site involved in drought-inducibility | |||
circadian | CAAAGATATC | 参与昼夜节律控制的顺式调控元件 | 1 |
cis-Acting regulatory element involved in circadian control | |||
Box 4 | ATTAAT | 光响应相关的保守DNA模块的一部分 | 1 |
Part of the conserved DNA module involved in light responsiveness | |||
G-box | CACGAC | 参与光响应的顺式作用调节元件 | 1 |
cis-Acting regulatory element involved in light responsiveness | |||
3-AF1 binding site | TAAGAGAGGAA | 光响应元件 Light responsive element | 1 |
GT1-motif | GGTTAA | 光响应元件 Light responsive element | 2 |
Sp1 | GGGCGG | 光响应元件 Light responsive element | 1 |
GA-motif | ATAGATAA | 光响应元件的一部分 Part of the light responsive element | 1 |
GTGGC-motif | GATTCTGTGGC | 光响应元件的一部分 Part of the light responsive element | 1 |
Table 2 The major cis-acting elements of VlRRA1 promoter
顺式作用元件 | 序列 | 功能 | 数量 |
---|---|---|---|
cis-acting element | Sequence | Function | Number |
CAAT-box | CCAAT | 启动子和增强子区域常见的顺式作用元件 | 14 |
Common cis-acting element in promoter and enhancer regions | |||
TATA-box | TATAAAT/TATA | 转录起始位点周围 - 30左右的核心启动子元件 | 28 |
Core promoter element around -30 of transcription start | |||
TCA-element | CCATCTTTTT | 参与水杨酸响应的顺式作用元件 | 1 |
cis-Acting element involved in salicylic acid responsiveness | |||
TGACG/CGTCA-motif | TGACG/CGTCA | 参与茉莉酸甲酯响应的顺式作用调节元件 | 4 |
cis-Acting regulatory element involved in the MeJA-responsiveness | |||
ARE | AAACCA | 厌氧诱导的关键顺式作用调节元件 | 2 |
cis-Acting regulatory element essential for the anaerobic induction | |||
LTR | CCGAAA | 参与低温响应的顺式作用元件 | 1 |
cis-Acting element involved in low-temperature responsiveness | |||
MBS | CAACTG | 参与干旱诱导的MYB结合位点 | 2 |
MYB binding site involved in drought-inducibility | |||
circadian | CAAAGATATC | 参与昼夜节律控制的顺式调控元件 | 1 |
cis-Acting regulatory element involved in circadian control | |||
Box 4 | ATTAAT | 光响应相关的保守DNA模块的一部分 | 1 |
Part of the conserved DNA module involved in light responsiveness | |||
G-box | CACGAC | 参与光响应的顺式作用调节元件 | 1 |
cis-Acting regulatory element involved in light responsiveness | |||
3-AF1 binding site | TAAGAGAGGAA | 光响应元件 Light responsive element | 1 |
GT1-motif | GGTTAA | 光响应元件 Light responsive element | 2 |
Sp1 | GGGCGG | 光响应元件 Light responsive element | 1 |
GA-motif | ATAGATAA | 光响应元件的一部分 Part of the light responsive element | 1 |
GTGGC-motif | GATTCTGTGGC | 光响应元件的一部分 Part of the light responsive element | 1 |
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