Genome-wide Association Studies of Drought Tolerance in Tomato

doi:10.16420/j.issn.0513-353x.2023-0694

Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (2): 229-238.doi: 10.16420/j.issn.0513-353x.2023-0694

• Genetic & Breeding · Germplasm Resources · Molecular Biology • Previous Articles Next Articles

Genome-wide Association Studies of Drought Tolerance in Tomato

DONG Shuchao1,2，HONG Jun3，LING Jiayi1,4，XIE Zixin1,5，ZHANG Shengjun6，ZHAO Liping1,2，SONG Liuxia1,2，WANG Yinlei1,2，and ZHAO Tongmin1,2,*

1Institute of Vegetable Crop，Jiangsu Academy of Agricultural Sciences，Nanjing 210014，China；2Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement，Nanjing 210014，China；3Center for Desert Agriculture，King Abdullah University of Science and Technology，Jeddah 23955，Saudi Arabia；4College of Horticulture and Plant Protection，Yangzhou University，Yangzhou，Jiangsu 225100，China；5College of Horticulture，Nanjing Agricultural University，Nanjing 210095，China；6Institute of Agricultural Sciences of Ili Kazakh Autonomous Prefecture，Yining，Xinjiang 835000，China

Online:2024-02-25 Published:2024-02-26

Abstract

Abstract: To conduct genome-wide association studies（GWAS）of drought tolerance，the relative water loss of detached leaves was analyzed after 24 h dehydration in 301 tomato（Solanum lycopersicum L.）accessions. A total number of three SNP sites（S02.1158758，S02.1160893，and S05.1426646）significantly associated with the drought tolerance of tomato accessions were identified by GWAS. Each single locus could explain 4.08%–18.97% of the phenotypic variation. Taken together，three SNP sites and seven candidate genes significantly associated with drought tolerance in tomato were identified in this study，which will help unravel the genetic and regulatory mechanisms of tomato drought tolerance，as well as establish a foundation for the genetic improvement of tomato stress tolerance.

Key words: tomato, drought tolerance, genome-wide association studies, candidate gene

CLC Number:

S 641.2

DONG Shuchao, HONG Jun, LING Jiayi, XIE Zixin, ZHANG Shengjun, ZHAO Liping, SONG Liuxia, WANG Yinlei, and ZHAO Tongmin, . Genome-wide Association Studies of Drought Tolerance in Tomato[J]. Acta Horticulturae Sinica, 2024, 51(2): 229-238.

[1]	LIU Genzhong, LI Fangman, GE Pingfei, TAO Jinbao, ZHANG Xingyu, YE Zhibiao, and ZHANG Yuyang, . QTL Mapping and Candidate Gene Identification Related to Ascorbic Acid Content in Tomato [J]. Acta Horticulturae Sinica, 2024, 51(2): 219-228.
[2]	XU Qin, WANG Jiaying, ZHANG Mannan, XIAO Zhihao, ZHENG Hankai, LU Yong’en, WANG Taotao, ZHANG Yuyang, ZHANG Junhong, YE Zhibiao, and YE Jie, . Identification of Genetic Loci and Molecular Marker Development of Salt Tolerance in Tomato Seedlings [J]. Acta Horticulturae Sinica, 2024, 51(2): 239-252.
[3]	YANG Liang, LIU Huan, MA Yanqin, LI Ju, WANG Hai’e, ZHOU Yujie, LONG Haicheng, MIAO Mingjun, LI Zhi, and CHANG Wei, . Creating High Lycopene Fruit Using CRISPR/Cas9 Technology in Tomato [J]. Acta Horticulturae Sinica, 2024, 51(2): 253-265.
[4]	YAN Chaofan, SUN Xuemei, ZHONG Qiwen, SHAO Dengkui, DENG Changrong, and WEN Junqin. Identification and Bioinformatics Analysis of 20S Proteasome Gene Family in Tomato [J]. Acta Horticulturae Sinica, 2024, 51(2): 266-280.
[5]	ZHANG Wenhao, ZHANG Hui, LIU Yuting, WANG Yan, ZHANG Yingying, WANG Xinman, WANG Quanhua, ZHU Weimin, and YANG Xuedong, . Preliminary Transcriptome Analysis in Two Tomato Fruits Materials with Different Sugar Content [J]. Acta Horticulturae Sinica, 2024, 51(2): 281-294.
[6]	ZHONG Zhaojiang, WU Zhen, ZHOU Rong, ZHU Weimin, YANG Xuedong, YU Xiaowei, XU Yan, GAO Yangyang, and JIANG Fangling, . Study on the Regulatory Mechanism of SlPL Gene Affecting Tomato Fruit Cracking [J]. Acta Horticulturae Sinica, 2024, 51(2): 295-308.
[7]	DONG Xiaonan, LÜ Hongmei, ZHAO Liqun, HE Bingqing, ZHANG Jiaojiao, ZHAO Bing, GUO Yangdong, and ZHANG Na, . SlMAPKKK43 Regulates Tomato Resistance to Gray Mold [J]. Acta Horticulturae Sinica, 2024, 51(2): 309-320.
[8]	XING Yanan, CHENG Jie, LIU Xin, LÜ Shuwen, WU Yuanyuan, and JIANG Jing, . The Sugar Transporter SlSWEET12c Negatively Regulates Tomato Resistance to Bacterial Leaf Spot Disease [J]. Acta Horticulturae Sinica, 2024, 51(2): 321-334.
[9]	WANG Lei, GAO Fangsheng, ZHANG Zhihuan, LI Weiqiang, CAO Bili, and XU Kun. Change of Sugar in Grafted Tomato Fruit and Correlation Analysis with Nitrogen and Phosphorus Content [J]. Acta Horticulturae Sinica, 2024, 51(2): 361-371.
[10]	WANG Tingting, TAN Zhanming, CHENG Yunxia, MA Xinchao, and WANG Yongming. Nondestructive Detection of Soluble Solids Content in Tomatoes Using Electrical Parameters and Machine Learning [J]. Acta Horticulturae Sinica, 2024, 51(2): 385-395.
[11]	SUN Yuchao, LI Shouhao, XIA Xiubo, YANG Wei, LI Minzan, and ZHANG Huanchun, . Detecting Tomato Fruit Ripeness and Appearance Quality Based on Improved YOLOv5s [J]. Acta Horticulturae Sinica, 2024, 51(2): 396-410.
[12]	ZHU Jie, LU Dingyihui, ZHANG Deyong, ZHANG Zhanhong, ZHANG Zhuo, SHI Xiaobin, and LIU Yong, . Effect of ToCV and TYLCV Infection on Detoxification Enzymes of Bemisia tabaci [J]. Acta Horticulturae Sinica, 2024, 51(2): 411-422.
[13]	SHEN Heng, WANG Lin, LI Qian, YUAN Shoujuan, ZHENG Wei, WANG Taotao, YE Zhibiao, and YANG Changxian, . Analyzing Flavor and Functional Components in Tomatoes：a Review [J]. Acta Horticulturae Sinica, 2024, 51(2): 423-438.
[14]	WEI Jianming, HUANG Xin, LI Yunzhou, and LIANG Yan, . Tomato Brown Rugose Fruit Virus（ToBRFV）Research Progress [J]. Acta Horticulturae Sinica, 2024, 51(2): 439-452.
[15]	TIAN Maosen, ZHOU Zhen, WANG Haijing, CUI Xia, SUN Shuai. Mapping of Gene Regulating Citric Acid Content in Tomato Fruit [J]. Acta Horticulturae Sinica, 2024, 51(1): 67-76.

Genome-wide Association Studies of Drought Tolerance in Tomato

PDF

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 15

Recommended Articles

Metrics

Comments