Identification and Phylogenetic Analysis of the POLYGALACTURONASE Gene Family in Apple

doi:10.16420/j.issn.0513-353x.2016-0224

ACTA HORTICULTURAE SINICA ›› 2016, Vol. 43 ›› Issue (10): 1863-1877.doi: 10.16420/j.issn.0513-353x.2016-0224

Previous Articles Next Articles

Identification and Phylogenetic Analysis of the POLYGALACTURONASE Gene Family in Apple

CHEN Hong-fei，SHAO Hong-xia，FAN Sheng，MA Juan-juan，ZHANG Dong，and HAN Ming-yu*

（College of Horticulture，Northwest A & F University，Yangling，Shaanxi 712100，China）

Online:2016-10-25 Published:2016-10-25

Abstract

Abstract:

In this study，a total of 85 apple polygalacturonase genes were characterized and clustered into seven groups based on the Malus × domestica whole-genome sequence. These coded for proteins containing 176–1 125 amino acids with isoelectric points ranging from 4.68–9.58. The predicted MdPG genes were distributed on all chromosomes，we found that MdPG75 was the largest gene，encompassing 18 exons. Finally，we systematically analyzed the functional connection network of MdPG proteins and predicted the functions of related MdPG genes before undertaking a preliminary validation. Overall，we have described the genome-wide identification and analysis of the apple PG gene family. except the 14th. We then systematically analyzed conserved MdPG protein motifs and the structures of MdPG genes. We identified MdPG proteins containing four conserved motifs that are widely found in different PG proteins. Additionally

Key words: apple, polygalacturonase, gene family analysis, bioinformatic

CLC Number:

S 666.1

CHEN Hong-fei，SHAO Hong-xia，FAN Sheng，MA Juan-juan，ZHANG Dong，and HAN Ming-yu*. Identification and Phylogenetic Analysis of the POLYGALACTURONASE Gene Family in Apple[J]. ACTA HORTICULTURAE SINICA, 2016, 43(10): 1863-1877.

[1]	YU Tingting, LI Huan, NING Yuansheng, SONG Jianfei, PENG Lulin, JIA Junqi, ZHANG Weiwei, and YANG Hongqiang. Genome-wide Identification of GRAS Gene Family in Apple and Expression Analysis of Its Response to Auxin [J]. Acta Horticulturae Sinica, 2023, 50(2): 397-409.
[2]	HAN Xiaolei, ZHANG Caixia, LIU Kai, YANG An, YAN Jiadi, LI Wuxing, KANG Liqun, and CONG Peihua. A New Mid-ripening Apple Cultivar‘Zhongping Youlei’ [J]. Acta Horticulturae Sinica, 2022, 49(S2): 1-2.
[3]	SUN Simiao, WANG Kun, GAO Yuan, WANG Dajiang, and LI Lianwen. A New Ornamental Crabapple Cultivar‘Zichen’ [J]. Acta Horticulturae Sinica, 2022, 49(S2): 267-268.
[4]	HAN Xiaolei, ZHANG Caixia, LIU Kai, YAN Jiadi, LI Wuxing, KANG Liqun, and CONG Peihua. A New Mid-ripening Apple Cultivar‘Pingyou 2’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 1-2.
[5]	WANG Qiang, CONG Peihua, and LIU Xiaofeng. A New Late Ripening Apple Cultivar‘Huayou Tianwa’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 3-4.
[6]	WANG Qiang, CONG Peihua, and LIU Xiaofeng. A New Mid-ripening Apple Cultivar‘Huayou Baomi’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 5-6.
[7]	YANG Ling, CONG Peihua, WANG Qiang, LI Wuxing, and KANG Liqun. A New Mid-ripening Apple Cultivar‘Huafeng’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 7-8.
[8]	LIU Chuanhe, HE Han, SHAO Xuehua, LAI Duo, KUANG Shizi, XIAO Weiqiang, LIU Yan. A New Pineapple Cultivar‘Yuetong’ [J]. Acta Horticulturae Sinica, 2022, 49(9): 2053-2054.
[9]	GAO Yanlong, WU Yuxia, ZHANG Zhongxing, WANG Shuangcheng, ZHANG Rui, ZHANG De, WANG Yanxiu. Bioinformatics Analysis of Apple ELO Gene Family and Its Expression Analysis Under Low Temperature Stress [J]. Acta Horticulturae Sinica, 2022, 49(8): 1621-1636.
[10]	LIU Chaoyang, LIAO Zhichan, LU Xinxin, HE Yehua. Identification of CslD Gene Family in Pineapple and Functional Analysis of AcoCslD2a [J]. Acta Horticulturae Sinica, 2022, 49(8): 1650-1662.
[11]	ZHENG Xiaodong, XI Xiangli, LI Yuqi, SUN Zhijuan, MA Changqing, HAN Mingsan, LI Shaoxuan, TIAN Yike, WANG Caihong. Effects and Regulating Mechanism of Exogenous Brassinosteroids on the Growth of Malus hupehensis Under Saline-alkali Stress [J]. Acta Horticulturae Sinica, 2022, 49(7): 1401-1414.
[12]	XIA Yan, HUANG Song, WU Xueli, LIU Yiqi, WANG Miaomiao, SONG Chunhui, BAI Tuanhui, SONG Shangwei, PANG Hongguang, JIAO Jian, ZHENG Xianbo. Identification and Analysis of Apple Viruses Diseases Based on Virome Sequencing Technology [J]. Acta Horticulturae Sinica, 2022, 49(7): 1415-1428.
[13]	QIAN Jieyu, JIANG Lingli, ZHENG Gang, CHEN Jiahong, LAI Wuhao, XU Menghan, FU Jianxin, ZHANG Chao. Identification and Expression Analysis of MYB Transcription Factors Regulating the Anthocyanin Biosynthesis in Zinnia elegans and Function Research of ZeMYB9 [J]. Acta Horticulturae Sinica, 2022, 49(7): 1505-1518.
[14]	LIU Zhaoxia, ZHANG Xin, WANG Lu, MA Yuting, CHEN Qian, ZHU Zhanling, GE Shunfeng, JIANG Yuanmao. Effects of Fertilizer Hole Application Sites on Fine Root Growth,¹⁵N Absorption and Utilization,Yield and Quality of Apple Trees [J]. Acta Horticulturae Sinica, 2022, 49(7): 1545-1556.
[15]	MA Weifeng, LI Yanmei, MA Zonghuan, CHEN Baihong, MAO Juan. Identification of Apple POD Gene Family and Functional Analysis of MdPOD15 Gene [J]. Acta Horticulturae Sinica, 2022, 49(6): 1181-1199.

Identification and Phylogenetic Analysis of the POLYGALACTURONASE Gene Family in Apple

PDF

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 15

Recommended Articles

Metrics

Comments