https://www.ahs.ac.cn/images/0513-353X/images/top-banner1.jpg|#|苹果
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https://www.ahs.ac.cn/images/0513-353X/images/top-banner6.jpg|#|黄瓜
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https://www.ahs.ac.cn/images/0513-353X/images/top-banner9.jpg|#|观赏荷花
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https://www.ahs.ac.cn/images/0513-353X/images/top-banner12.jpg|#|菊花

园艺学报 ›› 2019, Vol. 46 ›› Issue (3): 421-432.doi: 10.16420/j.issn.0513-353x.2018-0601

• 研究论文 • 上一篇    下一篇

苹果L-LEC-RLK基因家族鉴定及响应病原真菌信号的表达分析

田 丹,朵 虎,刘 河,吕前前,左存武*   

  1. (甘肃农业大学园艺学院,兰州 730070)
  • 出版日期:2019-03-25 发布日期:2019-03-25

Genome Wide Identification and Expression Patterns in Response to Signals from Fungal Pathogens of L-LEC-RLK Gene Family in Apple

TIAN Dan,DUO Hu,LIU He,Lü Qianqian,and ZUO Cunwu*   

  1. (Department of Horticulture,Gansu Agricultural University,Lanzhou 730070,China)
  • Online:2019-03-25 Published:2019-03-25

摘要: 以L型类凝集素(Lectin-LegB;Pfam:PF00139)和激酶(Pkinase;Pfam:PF00069)保守域全蛋白序列为种子序列,鉴定了苹果(Malus × domestica Borkh.)L型类凝集素类受体激酶(L-Lectin- Receptor-like kinase,L-LEC-RLK)家族成员,并对其理化性状、进化特征、亚细胞定位、染色体位置和表达模式进行分析。通过鉴定,共获得41个成员,其氨基酸序列大小介于423 ~ 1 291 aa,分子量介于47.12 ~ 143.27 kD,等电点介于5.50 ~ 8.91,其中28个成员位于质膜。根据进化分析将拟南芥、水稻、马铃薯、杨树和苹果等5个物种的L-LEC-RLKs分为8个亚组,苹果L-LEC-RLKs分布于亚组Ⅰ、Ⅱ、Ⅲ、Ⅴ、Ⅵ和Ⅷ。染色体位置分析表明苹果L-LEC-RLKs存在多个串联重复。该家族成员在不同组织中存在多样化的表达模式。27个成员在苹果接种腐烂病菌(Valsa mali,Vm)或斑点落叶病菌(Alternaria alternata apple pathotype,AAAP)后存在差异表达。其中,MD15G1226500和MD14G1055200的表达量在两种病害发生后都发生了显著的差异。以上差异基因可作为进一步开展抗病研究和功能分析的候选基因。

关键词: 苹果, L-LEC-RLK, 生物信息学分析, 苹果腐烂病, 苹果斑点落叶病

Abstract: Based on conservd protein sequence of Lectin-LegB(Pfam:PF00139),Pkinase(Pfam:PF00069)domain,the L-LEC-RLKs of apple(Malus × domestica Borkh.)were identified at a genome-wide level. For all members,physicochemical parameters,evolutionary characteristics,subcellular localization,chromosomal position and expressional patterns were investigated. In total,41 L-LEC-RLKs were identified in the apple genome,with amino acid size,the molecular weight,and isoelectric point varying from 423 to 1 291 aa,47.12–143.27 kD and 5.50 to 8.91,respectively. Among these,28 members were predicted on plasma membrane. Evolutionary analysis showed that L-LEC-RLKs from Arabidopsis,rice,potato,Populus and apple could be divided into 8 sub-groups,the members from apple were distributed in sub-groupⅠ,Ⅱ,Ⅲ,Ⅴ,Ⅵ and Ⅷ. Apple L-LEC-RLKs showed diverse expression patterns in different tissues. Twenty-seven members were differentially expressed when apple trees were infected with Valsa mili(Vm)or Alternaria alternata apple pathotype(AAAP). Strikingly,the expression levels of MD15G1226500 and MD14G1055200 were dramatically altered in apple infected with either pathogen. These differentially expressed genes could be used as candidate genes for disease resistance and further functional investigation.

Key words: apple, L-LEC-RLK, bioinformatic analysis, valsa canker of apple, alternaria blotch of apple

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