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ACTA HORTICULTURAE SINICA ›› 2011, Vol. 38 ›› Issue (09): 1667-1674.

• Fruit Trees • Previous Articles     Next Articles

Construction and Characterization of Normalized Full-length cDNA Library of Banana Roots

WANG Zhuo1,4,YIN Xiao-min1,WANG Jia-bao3,XU Bi-yu2,and JIN Zhi-qiang1,2,*   

  1. 1Haikou Experimental Station,Chinese Academy of Tropical Agricultural Sciences,Haikou 570102,China;2Institute of Tropical Bioscience and Biotechnology,Chinese Academy of Tropical Agricultural Sciences,Haikou 571101,China;3Environment and Plant Protection Institute,Chinese Academy of Tropical Agricultural Sciences,Danzhou,Hainan 571737,China;4Department of Agriculture,Hainan University,Haikou 570228,China
  • Received:2011-04-13 Revised:2011-09-02 Online:2011-09-25 Published:2011-09-25
  • Contact: JIN Zhi-qiang

Abstract: A normalized full-length cDNA library was constructed with the banana roots,by DSN(duplex-specific nuclease)normalization method combined with SMART(switching mechanism at 5′end of RNA transcript)technique. The titer of unamplified cDNA library was about 1.1 × 106 cfu · mL-1,the capacity was 5 × 106 clones,and the recombination ratio was more than 95%. The average insertion size was above 1 kb which suggested that the quality of the cDNA was better. Random selected 192 clones were sequenced and 179 high quality EST were obtained,which included 5 contings and 174 singlets. The redundancy was 2.35%. With small scale sequencing,145 unigenes were obtained. The analysis result indicated the library was efficient and reliable. Selecting 3 genes which is homological with other plants’ anti-abiotic stress genes from above sequences,they are expressed under drought,low temperature and salt tress using RT-PCR method. The result suggested that the 3 genes had different expression under different stresses.

Key words: banana, roots, normalized, cDNA library, gene, expression

CLC Number: