Genome-wide Identification of Peach SAUR Gene Family and Characterization of PpSAUR5 Gene

doi:10.16420/j.issn.0513-353x.2021-0932

Acta Horticulturae Sinica ›› 2023, Vol. 50 ›› Issue (1): 1-14.doi: 10.16420/j.issn.0513-353x.2021-0932

• Research Papers • Next Articles

Genome-wide Identification of Peach SAUR Gene Family and Characterization of PpSAUR5 Gene

ZHAI Hanhan^1,*, ZHAI Yujie^1,*, TIAN Yi²(), ZHANG Ye¹, YANG Li¹, WEN Zhiliang^1,**(), CHEN Haijiang^1,**()

¹College of Horticultural，Hebei Agricultural University，Baoding，Hebei 071000，China
²Mountainous Areas Research Institute，Nation Engineering Reserch Center for Agricuture in Northern Mountainous Region，Hebei Agricultural University，Baoding，Hebei 071001，China

Received:2022-07-15 Revised:2022-11-16 Online:2023-01-25 Published:2023-01-18
Contact: **（E-mail：yychj@hebau.edu.cn，taiyangheizi_129@163.com，yywzl@hebau.com.cn）

Abstract

Abstract:

To explore the functions of SAUR（Small Auxin-up RNA）gene family in plant growth and development，bioinformatics methods were used to identify the SAUR genes in peach（Prunus persica）. The chromosome location，gene structure，evolutionary relationship and gene expression were analyzed，and the function of PpSAUR5 was verified through transgenic method. A total of 80 PpSAUR members were identified and divided into 12 subgroups，which were unevenly distributed on the eight chromosomes. The analysis of gene structure showed that 75 PpSAUR genes contained only one exon，and five genes contained two to three exons. Eighteen SAUR genes were found to be associated with tree growth through RNA-seq analysis. These genes exhibited different expression patterns in response to exogenous hormone.Among them，PpSAUR5 was induced by both IAA and GA. PpSAUR5 transgenic Arabidopsis exhibited longer petiole，hypocotyl，root，and less sensitivity to NAA and 2,4-D treatment than wild-type. The results indicated that PpSAUR5 functioned to promote organ elongation.

Key words: peach, SAUR gene family, identification, gene expression

CLC Number:

S662.1

ZHAI Hanhan, ZHAI Yujie, TIAN Yi, ZHANG Ye, YANG Li, WEN Zhiliang, CHEN Haijiang. Genome-wide Identification of Peach SAUR Gene Family and Characterization of PpSAUR5 Gene[J]. Acta Horticulturae Sinica, 2023, 50(1): 1-14.

Figures/Tables 8

References 45

[1]	Altschul S F, Madden T L, Schffer A A, Zhang J, Zhang Z, Miller W, Lipman D J. 1997. Gapped BLAST and PSI-BLAST:a new generation of protein database search programs. Nucleic Acids Research, 25 (17):3389-3402.
[2]	Bailey T. 2009. Challenge and opportunity:rethinking the role and function of developmental education in community college. New Directions for Community Colleges,(145):11-30.
[3]	Bemer M, van Mourik H, Muiño J M, Ferrándiz C, Kaufmann K, Angenent G C. 2017. Fruitfull controls SAUR10 expression and regulates Arabidopsis growth and architecture. Journal of Experimental Botany, 68 (13):3391-3403. doi: 10.1093/jxb/erx184 URL
[4]	Cao K, Yang X W, Li Y, Zhu G R, Fang W C, Chen C W, Wang X W, Wu J L, Wang L R. 2021. New high-quality peach(Prunus persica L. Batsch)genome assembly to analyze the molecular evolutionary mechanism of volatile compounds in peach fruit. The Plant Journal, 108 (1):281-295. doi: 10.1111/tpj.15439 pmid: 34309935
[5]	Chen Y, Hao X, Cao J. 2014. Small auxin upregulated RNA(SAUR)gene family in maize:identification,evolution,and its phylogenetic comparison with Arabidopsis,rice,and sorghum. Journal of Integrative Plant Biology, 56 (2):133-150. doi: 10.1111/jipb.12127 URL
[6]	Cheng J, Zhang M M, Tan B, Jiang Y J, Zheng X B, Ye X, Guo Z J, Xiong T T, Wang W, Li J D, Feng J C. 2019. A single nucleotide mutation in GID1c disrupts its interaction with DELLA1 and causes a GA-insensitive dwarf phenotype in peach. Plant Biotechnology Journal, 17 (9):1723-1735. doi: 10.1111/pbi.13094 pmid: 30776191
[7]	Deng G, Huang X, Xie L, Tan S, Gbokie T J, Bao Y, Xie Z, Yi K. 2019. Identification and expression of SAUR genes in the CAM plant agave. Genes, 10 (7):555. doi: 10.3390/genes10070555 URL
[8]	Gil P, Liu Y, Orbović V, Verkamp E, Poff K L, Green P J. 1994. Characterization of the auxin-inducible SAUR-AC1 gene for use as a molecular genetic tool in Arabidopsis. Plant Physiology, 104 (2):777-784. doi: 10.1104/pp.104.2.777 pmid: 8159792
[9]	Hagen G, Guilfoyle T. 2002. Auxin-responsive gene expression:genes,promoters and regulatory factors. Plant Molecular Biology, 49 (3-4):373-385. doi: 10.1023/A:1015207114117 URL
[10]	Hou K, Wu W, Gan S S. 2013. SAUR36,a small auxin up RNA gene,is involved in the promotion of leaf senescence in Arabidopsis. Plant Physiology, 161 (2):1002-1009. doi: 10.1104/pp.112.212787 URL
[11]	Hu W F, Yan H W, Luo S S, Pan F, Wang Y, Xiang Y. 2018. Genome-wide analysis of poplar SAUR gene family and expression profiles under cold,polyethylene glycol and indole-3-acetic acid treatments. Plant Physiology and Biochemistry, 128:50-65. doi: 10.1016/j.plaphy.2018.04.021 URL
[12]	Jain M, Kaur N, Tyagi A K, Khurana J P. 2006a. The auxin-responsive GH 3 gene family in rice (Oryza sativa). Functional & Integrative Genomics, 6 (1):36-46.
[13]	Jain M, Tyagi A K, Khurana J P. 2006b. Genome-wide analysis,evolutionary expansion,and expression of early auxin-respon-sive SAUR gene family in rice(Oryza sativa). Genomics, 88 (3):360-371. doi: 10.1016/j.ygeno.2006.04.008 URL
[14]	Kant S, Bi Y M, Zhu T, Rothstein S J. 2009. SAUR39,a Small Auxin-Up RNA gene,acts as a negative regulator of auxin synthesis and transport in rice. Plant Physiology, 151 (2):691-701. doi: 10.1104/pp.109.143875 URL
[15]	Knauss S, Rohrmeier T, Lehle L. 2003. The auxin-induced maize gene ZmSAUR2 encodes a short-lived nuclear protein expressed in elongating tissues. Journal of Biological Chemistry, 278 (26):23936-23943. doi: 10.1074/jbc.M212585200 URL
[16]	Laloum T, Guiomar M, Duque P. 2017. Alternative splicing control of abiotic stress responses. Trends in Plant Science, 23 (2):140-150. doi: 10.1016/j.tplants.2017.09.019 URL
[17]	Li Ao, Cui Meng-jie, Chen Ke. 2018. Grape SAUR gene family identification and bioinformatics analysis. Plant Genetic Resources, 19 (2):326-337. (in Chinese)
	李傲, 崔梦杰, 陈珂. 2018. 葡萄SAUR基因家族鉴定与生物信息学分析. 植物遗传资源学报, 19 (2):326-337.
[18]	Li Jiao. 2013. Analysis of alternative splicing in whole transcriptome and its regulator SR protein under drought stress in seed of Zea mays L [M. D. Dissertation]. Zhengzhou: Zhengzhou University. (in Chinese)
	李娇. 2013. 玉米苗期干旱胁迫下可变剪接及其调控因子的研究[硕士论文]. 郑州: 郑州大学.
[19]	Li X, Liu G, Geng Y, Wu M, Pei W, Zhai H, Zang X, Li X, Zhang J, Yu S, Yu J. 2017. A genome-wide analysis of the small auxin-up RNA(SAUR)gene family in cotton. BMC Genomics, 18 (1):815-837. doi: 10.1186/s12864-017-4224-2 URL
[20]	Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2^-∆∆Ctmethod. Methods, 25 (4):402-408. doi: 10.1006/meth.2001.1262 pmid: 11846609
[21]	Liu Yan. 2016. Functional exploration of OsSAUR45 gene in rice growth and development[M. D. Dissertation]. Hangzhou: Zhejiang University. (in Chinese)
	刘嫣. 2016. OsSAUR45基因在水稻生长发育中的功能探索[硕士论文]. 杭州: 浙江大学.
[22]	Ma P A, Chen X, Liu C, Meng Y, Xia Z, Zeng C, Lu C, Wang W. 2017. MeSAUR1,encoded by a Small Auxin-Up RNA gene,acts as a transcription regulator to positively regulate ADP-glucose pyrophosphorylase small subunit1a gene in cassava. Frontiers in Plant Science, 8 (21):1315-1326. doi: 10.3389/fpls.2017.01315 URL
[23]	McClure B A, Guilfoyle T. 1987. Characterization of a class of smallauxin-inducible soybean polyadenylated RNAs. Plant Molecular Biology, 9 (6):611-623. doi: 10.1007/BF00020537 pmid: 24277197
[24]	Newman T C, Ohme T M, Taylor C B, Green P J. 1993. DST sequences,highly conserved among plant SAUR genes,target reporter transcripts for rapid decay in tobacco. The Plant Cell, 5 (6):701-714.
[25]	Niek S, Marian B. 2018. The SAUR gene family:the plant’s toolbox for adaptation of growth and development. Journal of Experimental Botany, 70 (1):17-27. doi: 10.1093/jxb/ery332 URL
[26]	Park J E, Kim Y S, Yoon H K, Park C M. 2007. Functional characterization of a Small Auxin-Up RNA gene in apical hook development in Arabidopsis. Plant Science, 172 (1):150-157. doi: 10.1016/j.plantsci.2006.08.005 URL
[27]	Praveen K K, Sunethra D, Nihal D. 2018. SAUR53 regulates organ elongation and apical hook development in Arabidopsis. Plant Signaling & Behavior, 13 (10). doi:10.1080/15592324. doi: 10.1080/15592324 URL
[28]	Ren H, Gray W M. 2015. SAUR proteins as effectors of hormonal and environmental signals in plant growth. Molecular Plant, 8 (8):1153-1164. doi: 10.1016/j.molp.2015.05.003 pmid: 25983207
[29]	Spartz A K, Lee S H, Wenger J P, Gonzalez N, Itoh H, Inzé D, Peer W A, Murphy A S, Overvoorde P J, Gray W M. 2012. The SAUR19 subfamily of Small Auxin-Up RNA genes promote cell expansion. Plant Journal, 70 (6):978-990. doi: 10.1111/j.1365-313X.2012.04946.x URL
[30]	Spartz A K, Lor V S, Ren H, Olszewski N E, Miller N D, Wu G S, Spalding E P, Gray William M. 2017. Constitutive expression of Arabidopsis Small Auxin-Up RNA19(SAUR19)in tomato confers auxin-independent hypocotyl elongation. Plant Physiology, 173 (2):1453-1462. doi: 10.1104/pp.16.01514 URL
[31]	Spartz A K, Ren H, Park M Y, Grandt K N, Lee S H, Murphy A S, Sussman M R, Overvoorde P J, Gray W M. 2014. SAUR inhibition of PP2C-D phosphatases activates plasma membrane H⁺-ATPases to promote cell expansion in Arabidopsis. The Plant Cell, 26 (5):2129-2142. doi: 10.1105/tpc.114.126037 URL
[32]	Stamm P, Kumar P P. 2013. Auxin and gibberellin responsive arabidopsis Small Auxin Up RNA36 regulates hypocotyl elongation in the light. Plant Cell Reports, 32:759-769. doi: 10.1007/s00299-013-1406-5 pmid: 23503980
[33]	Sun N, Wang J, Gao Z, Dong J, He H, Terzaghi W, Wei N, Deng X W, Chen H. 2016. Arabidopsis SAURs are critical for differential light regulation of the development of various organs. Proceedings of the National Academy of Sciences, 113 (21):6071-6076.
[34]	Wang Fusheng, Yu Hong, Hu Zhou, Guan Delong, Zhang Pan, Zhu Shiping, Zhao Xiaochun. 2020. Genome-wide identification and expression analysis of the citrus SAUR gene family. Acta Horticulturae Sinica, 47 (1):23-40. (in Chinese)
	王福生, 余洪, 胡洲, 管德龙, 张盼, 朱世平, 赵晓春. 2020. 柑橘属SAUR基因家族的全基因组鉴定及表达分析. 园艺学报, 47 (1):23-40.
[35]	Wang Hongfei, Shang Qingmao. 2019. Entification and expression analysis of cucumber SAUR gene family. Acta Horticulturae Sinica, 46 (6):1093-1111. (in Chinese)
	王红飞, 尚庆茂. 2019. 黄瓜SAUR基因家族的鉴定与表达分析. 园艺学报, 46 (6):1093-1111.
[36]	Wang S, Bai Y, Shen C, Wu Y, Zhang S, Jiang D, Guilfoyle T J, Chen M, Qi Y. 2010. Auxin-related gene families in abiotic stress response in Sorghum bicolor. Functional & Integrative Genomics, 10 (4):533-546.
[37]	Wang Wen-ran, Fan Xiu-cei, Zhang Wen-ying, Liu Chong-huai, Fang Jing-gui, Wang Chen. 2017. Research progress in fruit tree erythromycin metabolism and signal pathway. Biotech Bulletin, 33 (11):1-7. (in Chinese)
	王文然, 樊秀彩, 张文颖, 刘崇怀, 房经贵, 王晨. 2017. 果树赤霉素代谢与信号途径研究进展. 生物技术通报, 33 (11):1-7. doi: 10.13560/j.cnki.biotech.bull.1985.2017-0650
[38]	Wong J H, Spartz A K, Park M Y, Du M M, Gray W M. 2019. Mutation of a conserved motif of PP2C.D phosphatases confers SAUR immunity and constitutive activity. Plant Physiology, 181 (1):353-366. doi: 10.1104/pp.19.00496 pmid: 31311832
[39]	Wu J, Liu S, He Y J, Guan X Y, Zhu X F, Cheng L, Wang J, Lu G. 2012. Genome-wide analysis of SAUR gene family in Solanaceae species. Gene, 509 (1):38-50. doi: 10.1016/j.gene.2012.08.002 pmid: 22903030
[40]	Xie R J, Dong C C, Ma Y Y, Deng L, He S L, Yi S L, Lv Q, Zheng Y Q. 2015. Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A. Functional & Integrative Genomics, 15 (6):729-740.
[41]	Zhai Yu-jie. 2020. Growth potential difference and expression and regulation of related genes in different peach varieties[M. D. Dissertation]. Baoding: Hebei Agricultural University. (in Chinese)
	翟宇杰. 2020. 不同品种桃树生长势的差异及相关基因的表达与调控[硕士论文]. 保定: 河北农业大学.
[42]	Zhang C J, Wang J, Long M Y, Fan C Z. 2013. gKaKs:the pipeline for genome-level Ka/Ks calculation. Bioinformatics, 29 (5):645-646. doi: 10.1093/bioinformatics/btt009 URL
[43]	Zhang T, Jiang B, Xie R, Xu M, Liu K. 2020. Genome-wide identification and analysis of medicago truncatula Small Auxin-Up RNA(SAUR) gene family uncover their roles in nodule formation. Journal of Plant Biochemistry and Biotechnology, 30 (1):126-137. doi: 10.1007/s13562-020-00576-7 URL
[44]	Zhou Xiao-ya. 2020. Effect of paclobutrazol on the growth of peach shoots and related molecular mechanism research[M. D. Dissertation]. Baoding: Hebei Agricultural University. (in Chinese)
	周晓雅. 2020. 多效唑抑制桃新梢生长的效应及相关分子机理研究[硕士论文]. 保定: 河北农业大学.
[45]	Zhu Yu-bin, Kong Ying-ying, Wang Jun-hui. 2014. Research advances in auxin-responsive SAUR genes. Life Sciences, 26 (4):407-413. (in Chinese) doi: 10.1016/0024-3205(80)90158-7 URL
	朱宇斌, 孔莹莹, 王君晖. 2014. 植物生长素响应基因SAUR的研究进展. 生命科学, 26 (4):407-413.

基因Gene	登录号Bank number	引物序列（5'-3'）Primer sequence
PpActin	Prupe.6G163400	F：GCCCAAGTGCTTCGTATGCT；R：ATCACCGGCTGCAATCCA
PpSAUR3	Prupe.1G221300	F：TCCGAGACGGGCTAAGAAGA；R：ATTCGGGTACGACAGCCAAG
PpSAUR4	Prupe.1G367800	F：TTTGGAACTCAGGGCGAGTC；R：CAAGGCCTCCCTTTGGATGT
PpSAUR5	Prupe.1G368100	F：ACGAAGCAACGGTCGAGAAT；R：CAGTTGCACCCGATTTGTGG
PpSAUR10	Prupe.2G140600	F：TTTGGAACTCAGGGCGAGTC；R：CAAGGCCTCCCTTTGGATGT
PpSAUR20	Prupe.4G136800	F：TTTGGAACCGTCACAGGCTT；R：CTCCTTGCAGCAACAAACCC
PpSAUR26	Prupe.6G108500	F：ATGGAATGGTGATGCCACCC；R：TGGCTATGACGAATGTCCCAA
PpSAUR34	Prupe.7G167000	F：CTTAAGAACCGCCCGGAGTT；R：AGTACAAGCCGAGGAGGAGT
PpSAUR41	Prupe.8G078600	F：CAAGGGATTGTGAGGCCCAT；R：CTCAAACCGCAGTGCTCAAG
PpSAUR42	Prupe.8G078700	F：GCTTCTTTTGGCTCTCCCCA；R：TCCGGTTGCCTGGAATTGTT
PpSAUR46	Prupe.8G079100	F：AAACTGCGTCTTTTGGCTCC；R：TTGCCCGGAATTGTTAACGC
PpSAUR47	Prupe.8G079200	F：AGGCATCTTCACTGCATGGG；R：GGAGAGCAAGAAGAAGCGGT
PpSAUR56	Prupe.8G080200	F：ACATAGGAATGACGACCCGC；R：CCGTCGTCCTAGTAAGCAGC
PpSAUR60	Prupe.8G080600	F：TGAAACTCTGGATGGCCCAG；R：AGATGTGCCAAAGGGGCATT
PpSAUR64	Prupe.8G081100	F：TTCTCAAGCTCTCGTGGCTG；R：GTGCCGGAAGATGTGAAGGA
PpSAUR73	Prupe.8G082100	F：GGCACCCAACTGAGAAGTGA；R：ACGAGGTTCCAAAAGGGCAT
PpSAUR74	Prupe.8G082200	F：GCGGGAAGTGAGATGAAGGA；R：GGAGCCAAAAGACGCAGTTT
PpSAUR77	Prupe.8G157900	F：TAATTGCTCTCCATCGCCCC；R：AGAGTTGCTAAGCGAGGCTG
PpSAUR80	Prupe.8G158200	F：AGACGATCACGTGACAAGGG；R：CGTCGAGCTCCTGAACAAGT

基因Gene	登录号Bank number	引物序列（5'-3'）Primer sequence
PpActin	Prupe.6G163400	F：GCCCAAGTGCTTCGTATGCT；R：ATCACCGGCTGCAATCCA
PpSAUR3	Prupe.1G221300	F：TCCGAGACGGGCTAAGAAGA；R：ATTCGGGTACGACAGCCAAG
PpSAUR4	Prupe.1G367800	F：TTTGGAACTCAGGGCGAGTC；R：CAAGGCCTCCCTTTGGATGT
PpSAUR5	Prupe.1G368100	F：ACGAAGCAACGGTCGAGAAT；R：CAGTTGCACCCGATTTGTGG
PpSAUR10	Prupe.2G140600	F：TTTGGAACTCAGGGCGAGTC；R：CAAGGCCTCCCTTTGGATGT
PpSAUR20	Prupe.4G136800	F：TTTGGAACCGTCACAGGCTT；R：CTCCTTGCAGCAACAAACCC
PpSAUR26	Prupe.6G108500	F：ATGGAATGGTGATGCCACCC；R：TGGCTATGACGAATGTCCCAA
PpSAUR34	Prupe.7G167000	F：CTTAAGAACCGCCCGGAGTT；R：AGTACAAGCCGAGGAGGAGT
PpSAUR41	Prupe.8G078600	F：CAAGGGATTGTGAGGCCCAT；R：CTCAAACCGCAGTGCTCAAG
PpSAUR42	Prupe.8G078700	F：GCTTCTTTTGGCTCTCCCCA；R：TCCGGTTGCCTGGAATTGTT
PpSAUR46	Prupe.8G079100	F：AAACTGCGTCTTTTGGCTCC；R：TTGCCCGGAATTGTTAACGC
PpSAUR47	Prupe.8G079200	F：AGGCATCTTCACTGCATGGG；R：GGAGAGCAAGAAGAAGCGGT
PpSAUR56	Prupe.8G080200	F：ACATAGGAATGACGACCCGC；R：CCGTCGTCCTAGTAAGCAGC
PpSAUR60	Prupe.8G080600	F：TGAAACTCTGGATGGCCCAG；R：AGATGTGCCAAAGGGGCATT
PpSAUR64	Prupe.8G081100	F：TTCTCAAGCTCTCGTGGCTG；R：GTGCCGGAAGATGTGAAGGA
PpSAUR73	Prupe.8G082100	F：GGCACCCAACTGAGAAGTGA；R：ACGAGGTTCCAAAAGGGCAT
PpSAUR74	Prupe.8G082200	F：GCGGGAAGTGAGATGAAGGA；R：GGAGCCAAAAGACGCAGTTT
PpSAUR77	Prupe.8G157900	F：TAATTGCTCTCCATCGCCCC；R：AGAGTTGCTAAGCGAGGCTG
PpSAUR80	Prupe.8G158200	F：AGACGATCACGTGACAAGGG；R：CGTCGAGCTCCTGAACAAGT

基因名称 Gene name	基因登录号 Gene ID	染色体位置Chromosome location		蛋白质Protein
基因名称 Gene name	基因登录号 Gene ID	起始位点/bp Start position	终止位点/bp End position	长度/aa Length	分子量/D MW	理论等点 pI
PpSAUR1	Prupe.1G000200	42 266	44 493	173	19 380.4	11.05
PpSAUR2	Prupe.1G067400	4 810 025	4 811 236	126	14 192.5	8.63
PpSAUR3	Prupe.1G221300	23 585 167	23 586 506	127	14 725.8	8.23
PpSAUR4	Prupe.1G367800	33 658 384	33 660 037	126	14 253.5	9.14
PpSAUR5	Prupe.1G368100	33 683 348	33 685 088	131	15 426.6	7.38
PpSAUR6	Prupe.1G455700	38 251 559	38 252 129	127	14 616.0	8.15
PpSAUR7	Prupe.2G131400	18 964 628	18 965 376	122	13 712.8	9.44
PpSAUR8	Prupe.2G131500	18 966 838	18 967 203	98	11 226.7	7.22
PpSAUR9	Prupe.2G131600	18 972 827	18 973 204	91	9 998.4	7.51
PpSAUR10	Prupe.2G140600	19 729 097	19 730 272	105	11 631.2	7.50
PpSAUR11	Prupe.2G194600	23 275 229	23 276 493	82	9 069.3	5.02
PpSAUR12	Prupe.2G211600	24 387 357	24 388 174	84	9 269.6	9.19
PpSAUR13	Prupe.2G317100	29 700 658	29 701 286	151	16 864.3	9.12
PpSAUR14	Prupe.3G023900	1 785 030	1 786 044	78	8 619.9	8.98
PpSAUR15	Prupe.3G024000	1 787 115	1 787 919	102	11 216.9	8.21
PpSAUR16	Prupe.3G024100	1 789 219	1 789 680	100	11 198.2	10.63
PpSAUR17	Prupe.3G035000	2 557 789	2 558 556	94	10 323.8	7.51
PpSAUR18	Prupe.3G035100	2 561 778	2 562 092	101	11 069.5	5.82
PpSAUR19	Prupe.3G177500	19 444 270	19 444 578	105	11 878.7	8.49
PpSAUR20	Prupe.4G136800	7 593 725	7 595 443	101	11 114.6	6.51
基因名称 Gene name	基因登录号 Gene ID	染色体位置Chromosome location		蛋白质Protein
基因名称 Gene name	基因登录号 Gene ID	起始位点/bp Start position	终止位点/bp End position	长度/aa Length	分子量/D MW	理论等点 pI
PpSAUR21	Prupe.4G140200	7 830 216	7 831 392	100	11 186.7	9.54
PpSAUR22	Prupe.5G076200	9 038 680	9 039 809	101	11 014.4	5.64
PpSAUR23	Prupe.5G147100	13 508 896	13 509 615	97	11 199.2	10.16
PpSAUR24	Prupe.6G108300	7 731 068	7 732 074	101	11 239.8	8.46
PpSAUR25	Prupe.6G108400	7 734 034	7 735 462	95	10 557.3	8.50
PpSAUR26	Prupe.6G108500	7 738 492	7 739 254	92	10 194.6	5.64
PpSAUR27	Prupe.6G232300	23 489 981	23 490 760	95	10 594.2	9.09
PpSAUR28	Prupe.6G234900	23 623 506	23 623 883	94	10 125.5	5.02
PpSAUR29	Prupe.7G048400	8 547 207	8 549 249	94	10 154.6	6.51
PpSAUR30	Prupe.7G048500	8 552 726	8 553 184	91	9 912.4	6.78
PpSAUR31	Prupe.7G048600	8 555 516	8 555 977	102	11 231.0	8.50
PpSAUR32	Prupe.7G104000	13 346 482	13 347 250	102	11 251.0	9.22
PpSAUR33	Prupe.7G120400	14 389 996	14 390 765	99	11 347.4	10.09
PpSAUR34	Prupe.7G167000	17 051 802	17 052 822	95	10 491.2	8.51
PpSAUR35	Prupe.7G192600	18 371 150	18 371 953	101	11 152.6	5.82
PpSAUR36	Prupe.7G192900	18 381 958	18 384 145	102	11 092.6	7.57
PpSAUR37	Prupe.8G063100	9 167 730	9 168 155	83	9 202.8	10.60
PpSAUR38	Prupe.8G072300	10 611 481	10 611 777	110	12 308.0	5.68
PpSAUR39	Prupe.8G072400	10 619 587	10 619 877	98	11 109.5	5.83
PpSAUR40	Prupe.8G078300	11 247 032	11 247 412	92	10 118.5	8.73
PpSAUR41	Prupe.8G078600	11 268 588	11 269 189	94	10 373.9	6.51
PpSAUR42	Prupe.8G078700	11 272 704	11 273 458	100	10 956.4	5.02
PpSAUR43	Prupe.8G078800	11 274 113	11 275 033	101	11 084.6	5.82
PpSAUR44	Prupe.8G078900	11 275 613	11 276 700	94	10 170.6	6.50
PpSAUR45	Prupe.8G079000	11 277 974	11 278 668	101	11 105.7	8.21
PpSAUR46	Prupe.8G079100	11 279 560	11 280 268	75	8 307.4	9.72
PpSAUR47	Prupe.8G079200	11 283 706	11 284 527	100	11 156.7	6.96
PpSAUR48	Prupe.8G079300	11 285 739	11 286 129	142	16 708.7	11.69
PpSAUR49	Prupe.8G079400	11 317 660	11 318 049	91	10 108.4	5.65
PpSAUR50	Prupe.8G079500	11 319 064	11 319 345	130	14 432.6	9.50
PpSAUR51	Prupe.8G079600	11 320 009	11 320 901	83	9 461.8	4.25
PpSAUR52	Prupe.8G079700	11 321 405	11 322 307	143	16 113.0	6.78
PpSAUR53	Prupe.8G079900	11 334 888	11 335 121	126	14 374.5	8.41
PpSAUR54	Prupe.8G080000	11 347 844	11 348 229	141	15 995.3	8.26
PpSAUR55	Prupe.8G080100	11 365 948	11 367 159	139	15 191.0	6.26
PpSAUR56	Prupe.8G080200	11 368 586	11 368 888	129	14 373.4	6.92
PpSAUR57	Prupe.8G080300	11 401 448	11 402 420	140	15 993.1	9.61
PpSAUR58	Prupe.8G080400	11 404 019	11 404 243	136	15 427.5	8.71
PpSAUR59	Prupe.8G080500	11 439 488	11 439 769	176	19 727.6	9.92
PpSAUR60	Prupe.8G080600	11 445 368	11 447 102	167	19 436.6	11.24
PpSAUR61	Prupe.8G080700	11 447 103	11 448 991	153	17 140.7	8.96
PpSAUR62	Prupe.8G080800	11 463 264	11 463 545	154	17 115.6	10.24
PpSAUR63	Prupe.8G081000	11 469 135	11 470 199	133	14 817.0	8.35
PpSAUR64	Prupe.8G081100	11 471 700	11 473 503	208	23 314.0	10.40
PpSAUR65	Prupe.8G081200	11 473 808	11 474 113	107	12 082.8	8.71
PpSAUR66	Prupe.8G081300	11 475 669	11 476 574	193	21 340.7	6.79
PpSAUR67	Prupe.8G081400	11 478 089	11 478 731	126	14 033.7	5.19
PpSAUR68	Prupe.8G081500	11 480 644	11 480 943	130	14 265.3	7.44
PpSAUR69	Prupe.8G081600	11 482 304	11 483 354	154	17 300.3	10.11
PpSAUR70	Prupe.8G081700	11 483 436	11 485 084	118	13 160.0	6.51
PpSAUR71	Prupe.8G081800	11 485 961	11 486 206	146	16 597.0	8.50
PpSAUR72	Prupe.8G081900	11 487 552	11 488 319	189	21 234.2	9.62
PpSAUR73	Prupe.8G082100	11 514 115	11 514 913	103	11 608.7	10.19
PpSAUR74	Prupe.8G082200	11 528 634	11 529 256	105	11 938.9	9.86
PpSAUR75	Prupe.8G157700	16 792 611	16 792 886	151	17 033.3	10.23
PpSAUR76	Prupe.8G157800	16 794 545	16 795 015	106	12 089.9	8.24
PpSAUR77	Prupe.8G157900	16 797 713	16 798 249	141	15 509.0	8.33
PpSAUR78	Prupe.8G158000	16 799 338	16 800 140	167	18 583.6	10.43
PpSAUR79	Prupe.8G158100	16 802 092	16 802 385	165	18 522.6	9.92
PpSAUR80	Prupe.8G158200	16 803 867	16 804 613	189	21 198.9	8.38

基因名称 Gene name	基因登录号 Gene ID	染色体位置Chromosome location		蛋白质Protein
基因名称 Gene name	基因登录号 Gene ID	起始位点/bp Start position	终止位点/bp End position	长度/aa Length	分子量/D MW	理论等点 pI
PpSAUR1	Prupe.1G000200	42 266	44 493	173	19 380.4	11.05
PpSAUR2	Prupe.1G067400	4 810 025	4 811 236	126	14 192.5	8.63
PpSAUR3	Prupe.1G221300	23 585 167	23 586 506	127	14 725.8	8.23
PpSAUR4	Prupe.1G367800	33 658 384	33 660 037	126	14 253.5	9.14
PpSAUR5	Prupe.1G368100	33 683 348	33 685 088	131	15 426.6	7.38
PpSAUR6	Prupe.1G455700	38 251 559	38 252 129	127	14 616.0	8.15
PpSAUR7	Prupe.2G131400	18 964 628	18 965 376	122	13 712.8	9.44
PpSAUR8	Prupe.2G131500	18 966 838	18 967 203	98	11 226.7	7.22
PpSAUR9	Prupe.2G131600	18 972 827	18 973 204	91	9 998.4	7.51
PpSAUR10	Prupe.2G140600	19 729 097	19 730 272	105	11 631.2	7.50
PpSAUR11	Prupe.2G194600	23 275 229	23 276 493	82	9 069.3	5.02
PpSAUR12	Prupe.2G211600	24 387 357	24 388 174	84	9 269.6	9.19
PpSAUR13	Prupe.2G317100	29 700 658	29 701 286	151	16 864.3	9.12
PpSAUR14	Prupe.3G023900	1 785 030	1 786 044	78	8 619.9	8.98
PpSAUR15	Prupe.3G024000	1 787 115	1 787 919	102	11 216.9	8.21
PpSAUR16	Prupe.3G024100	1 789 219	1 789 680	100	11 198.2	10.63
PpSAUR17	Prupe.3G035000	2 557 789	2 558 556	94	10 323.8	7.51
PpSAUR18	Prupe.3G035100	2 561 778	2 562 092	101	11 069.5	5.82
PpSAUR19	Prupe.3G177500	19 444 270	19 444 578	105	11 878.7	8.49
PpSAUR20	Prupe.4G136800	7 593 725	7 595 443	101	11 114.6	6.51
基因名称 Gene name	基因登录号 Gene ID	染色体位置Chromosome location		蛋白质Protein
基因名称 Gene name	基因登录号 Gene ID	起始位点/bp Start position	终止位点/bp End position	长度/aa Length	分子量/D MW	理论等点 pI
PpSAUR21	Prupe.4G140200	7 830 216	7 831 392	100	11 186.7	9.54
PpSAUR22	Prupe.5G076200	9 038 680	9 039 809	101	11 014.4	5.64
PpSAUR23	Prupe.5G147100	13 508 896	13 509 615	97	11 199.2	10.16
PpSAUR24	Prupe.6G108300	7 731 068	7 732 074	101	11 239.8	8.46
PpSAUR25	Prupe.6G108400	7 734 034	7 735 462	95	10 557.3	8.50
PpSAUR26	Prupe.6G108500	7 738 492	7 739 254	92	10 194.6	5.64
PpSAUR27	Prupe.6G232300	23 489 981	23 490 760	95	10 594.2	9.09
PpSAUR28	Prupe.6G234900	23 623 506	23 623 883	94	10 125.5	5.02
PpSAUR29	Prupe.7G048400	8 547 207	8 549 249	94	10 154.6	6.51
PpSAUR30	Prupe.7G048500	8 552 726	8 553 184	91	9 912.4	6.78
PpSAUR31	Prupe.7G048600	8 555 516	8 555 977	102	11 231.0	8.50
PpSAUR32	Prupe.7G104000	13 346 482	13 347 250	102	11 251.0	9.22
PpSAUR33	Prupe.7G120400	14 389 996	14 390 765	99	11 347.4	10.09
PpSAUR34	Prupe.7G167000	17 051 802	17 052 822	95	10 491.2	8.51
PpSAUR35	Prupe.7G192600	18 371 150	18 371 953	101	11 152.6	5.82
PpSAUR36	Prupe.7G192900	18 381 958	18 384 145	102	11 092.6	7.57
PpSAUR37	Prupe.8G063100	9 167 730	9 168 155	83	9 202.8	10.60
PpSAUR38	Prupe.8G072300	10 611 481	10 611 777	110	12 308.0	5.68
PpSAUR39	Prupe.8G072400	10 619 587	10 619 877	98	11 109.5	5.83
PpSAUR40	Prupe.8G078300	11 247 032	11 247 412	92	10 118.5	8.73
PpSAUR41	Prupe.8G078600	11 268 588	11 269 189	94	10 373.9	6.51
PpSAUR42	Prupe.8G078700	11 272 704	11 273 458	100	10 956.4	5.02
PpSAUR43	Prupe.8G078800	11 274 113	11 275 033	101	11 084.6	5.82
PpSAUR44	Prupe.8G078900	11 275 613	11 276 700	94	10 170.6	6.50
PpSAUR45	Prupe.8G079000	11 277 974	11 278 668	101	11 105.7	8.21
PpSAUR46	Prupe.8G079100	11 279 560	11 280 268	75	8 307.4	9.72
PpSAUR47	Prupe.8G079200	11 283 706	11 284 527	100	11 156.7	6.96
PpSAUR48	Prupe.8G079300	11 285 739	11 286 129	142	16 708.7	11.69
PpSAUR49	Prupe.8G079400	11 317 660	11 318 049	91	10 108.4	5.65
PpSAUR50	Prupe.8G079500	11 319 064	11 319 345	130	14 432.6	9.50
PpSAUR51	Prupe.8G079600	11 320 009	11 320 901	83	9 461.8	4.25
PpSAUR52	Prupe.8G079700	11 321 405	11 322 307	143	16 113.0	6.78
PpSAUR53	Prupe.8G079900	11 334 888	11 335 121	126	14 374.5	8.41
PpSAUR54	Prupe.8G080000	11 347 844	11 348 229	141	15 995.3	8.26
PpSAUR55	Prupe.8G080100	11 365 948	11 367 159	139	15 191.0	6.26
PpSAUR56	Prupe.8G080200	11 368 586	11 368 888	129	14 373.4	6.92
PpSAUR57	Prupe.8G080300	11 401 448	11 402 420	140	15 993.1	9.61
PpSAUR58	Prupe.8G080400	11 404 019	11 404 243	136	15 427.5	8.71
PpSAUR59	Prupe.8G080500	11 439 488	11 439 769	176	19 727.6	9.92
PpSAUR60	Prupe.8G080600	11 445 368	11 447 102	167	19 436.6	11.24
PpSAUR61	Prupe.8G080700	11 447 103	11 448 991	153	17 140.7	8.96
PpSAUR62	Prupe.8G080800	11 463 264	11 463 545	154	17 115.6	10.24
PpSAUR63	Prupe.8G081000	11 469 135	11 470 199	133	14 817.0	8.35
PpSAUR64	Prupe.8G081100	11 471 700	11 473 503	208	23 314.0	10.40
PpSAUR65	Prupe.8G081200	11 473 808	11 474 113	107	12 082.8	8.71
PpSAUR66	Prupe.8G081300	11 475 669	11 476 574	193	21 340.7	6.79
PpSAUR67	Prupe.8G081400	11 478 089	11 478 731	126	14 033.7	5.19
PpSAUR68	Prupe.8G081500	11 480 644	11 480 943	130	14 265.3	7.44
PpSAUR69	Prupe.8G081600	11 482 304	11 483 354	154	17 300.3	10.11
PpSAUR70	Prupe.8G081700	11 483 436	11 485 084	118	13 160.0	6.51
PpSAUR71	Prupe.8G081800	11 485 961	11 486 206	146	16 597.0	8.50
PpSAUR72	Prupe.8G081900	11 487 552	11 488 319	189	21 234.2	9.62
PpSAUR73	Prupe.8G082100	11 514 115	11 514 913	103	11 608.7	10.19
PpSAUR74	Prupe.8G082200	11 528 634	11 529 256	105	11 938.9	9.86
PpSAUR75	Prupe.8G157700	16 792 611	16 792 886	151	17 033.3	10.23
PpSAUR76	Prupe.8G157800	16 794 545	16 795 015	106	12 089.9	8.24
PpSAUR77	Prupe.8G157900	16 797 713	16 798 249	141	15 509.0	8.33
PpSAUR78	Prupe.8G158000	16 799 338	16 800 140	167	18 583.6	10.43
PpSAUR79	Prupe.8G158100	16 802 092	16 802 385	165	18 522.6	9.92
PpSAUR80	Prupe.8G158200	16 803 867	16 804 613	189	21 198.9	8.38

Genome-wide Identification of Peach SAUR Gene Family and Characterization of PpSAUR5 Gene

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