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园艺学报 ›› 2017, Vol. 44 ›› Issue (11): 2135-2149.doi: 10.16420/j.issn.0513-353x.2017-0282

• 研究论文 • 上一篇    下一篇

‘黑油椿’香椿嫩芽高通量转录组测序及萜类代谢物质初步分析

赵 胡*,唐开静,范小莹,吕伟健   

  1. 阜阳师范学院生物与食品工程学院,抗衰老中草药安徽省工程技术研究中心,安徽阜阳 236037
  • 出版日期:2017-11-25 发布日期:2017-11-25

High-throughput Transcriptome Sequencing and Primary Analysis of Terpenoids Metabolism in Toona sinensis‘Heiyouchun’Sprout

ZHAO Hu*,TANG Kaijing,FAN Xiaoying,and LÜ Weijian   

  1. School of Biology and Food Engineering,Fuyang Normal College,Engineering Technology Research Center of
    Anti-aging Chinese Herbal Medicine,Fuyang,Anhui 236037,China
  • Online:2017-11-25 Published:2017-11-25

摘要:

‘黑油椿’香椿(Toona sinensis‘Heiyouchun’)嫩芽富含萜类物质,主要以倍半萜为主,
其中去氢香橙烯、9,10–脱氢异长叶烯和β–石竹烯含量分别高达4 440.71,1 932.02 和1 799.89 ng · g-1。
采用高通量RNA-seq 测序技术(Illumina HiSeqTM4000)对嫩芽进行转录组测序,获得高质量的碱基数据
量为4.70 Gb,共计86 870 个转录本(Transcript),对这些转录本进一步组装,得到55 850 个单基因簇
(Unigene),平均长度为1 013 bp。序列同源性比对表明,39 408 个单基因簇与数据库中其他物种基因存
在不同程度的同源性,功能注释匹配度最高的物种为甜橙(Citrus sinensis)。将全部单基因簇进行GO 数
据库比对,19 704 个单基因簇获得GO 功能注释,分为细胞组分、分子功能和生物学过程等3 大类群和
54 个亚类,其中与代谢过程、细胞组分、结合和催化活性及细胞过程相关的单基因簇占绝大多数。利用
COG 数据库进行比对,14 186 个单基因簇分布于25 个功能区域。KEGG 代谢通路数据库比对,有28 400
个单基因簇获得功能注释,分为6 大类,21 个亚类和135 个代谢途径分支。通过对转录组数据进一步分
析发现,参与‘黑油椿’嫩芽风味形成相关萜类合成的单基因簇共计467 个,其中参与萜类骨架生物合
成、单萜生物合成、倍半萜和三萜类合成、二萜合成的单基因簇分别为226、71、86、84 个,这为进一
步研究香椿萜类物质生物合成相关的基因功能及解析其风味物质形成的分子机制提供了基础数据。

关键词: 香椿, 转录组, 功能注释, 萜类代谢

Abstract:

Toona sinensis‘Heiyouchun’sprouts were rich in terpenoids that were mainly composed
of sesquiterpenoids such as dehydroaromadendrene,9,10-dehydroisolongifolene,and β-caryophyllene,
their contents were as high as 4 440.71,1 932.02 and 1 799.89 ng · g-1,respectively. To understand
terpenoids biosynthetic pathway,high-through RNA-seq technology was used to genernate the
transcriptome of Toona sinensis‘Heiyouchun’sprout and high-quality base data of 4.70 Gb and 86 870 transcripts were acquired. Furthermore,a total of 55 850 unigenes with average length of 1 013 bp was
obtained by de novo assembly. Sequence alignment analysis showed 39 408 unigenes in our transcriptomic
data had sequence homology with those of other species at different degrees and the highest matching ratio
of functional annotation to Citrus sinensis. Gene ontology analysis revealed that annotated 19 704 unigenes
were grouped into 54 different categories in terms of cellular component,molecular function and
biological process. Among them,the unigenes involved in metabolic process,cell composition,binding
and catalytic activity,and cell processes were predominant. Based on the cluster of orthologous groups,
14 186 unigenes were further annotated and grouped into 25 functional categories. Moreover,28 400 unigenes
were annotated to 135 KEGG pathway and broadly divided into 6 categories of 21 branches. Our data
indicated that 467 unigenes were mined and involved in terpenoids biosynthesis related to flavor formation
of Toona sinensis‘Heiyouchun’sprout,including 226 for terpenoid backbone biosynthesis,71 for
monoterpenoids biosynthesis , 86 for sesquiterpenoids and triterpenoids biosynthesis , and 84 for
diterpenoids biosynthesis,which laid a solid foundation for further study on the function of genes related
to terpenoids biosynthesis and the molecular mechanism of flavor compounds formation.

Key words: Toona sinensis, transcriptome, gene annotation, terpenoids metabolism