Acta Horticulturae Sinica ›› 2026, Vol. 53 ›› Issue (5): 1253-1273.doi: 10.16420/j.issn.0513-353x.2025-0194
• Genetic & Breeding · Germplasm Resources · Molecular Biology • Previous Articles Next Articles
WANG Bin1,2, CAO Qiuyan1,*(
), YUAN Xiao1,3, ZHU Yunna1,2, HUANG Changjian1, LIU Tangmao1,*(
)
Received:2025-12-04
Revised:2026-02-13
Online:2026-05-25
Published:2026-05-26
Contact:
CAO Qiuyan, LIU Tangmao
WANG Bin, CAO Qiuyan, YUAN Xiao, ZHU Yunna, HUANG Changjian, LIU Tangmao. Comparative Transcriptomic Analysis of the Effects of Storage Temperature on Peel De-greening of Postharvest Thai Green Pomelo[J]. Acta Horticulturae Sinica, 2026, 53(5): 1253-1273.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2025-0194
| 基因ID或NCBI登录号 Gene ID or NCBI accession No. | 正向序列(5′-3′) Forward sequence | 反向序列(5′-3′) Reverse sequence |
|---|---|---|
| GQ389668.1 | TTCTCACTGAGGCTCCCCTT | AGAGAGAAAGCACAGCCTGG |
| Cg4g006180 | AAGTGCGTTTGCGATTTGCT | AGCTGACCTTGGTACCGTTG |
| Cg5g014530 | GATGGAAGACCCACCCCAAG | TCACCATTCCTGGCGACAAA |
| Cg7g023650 | CCACCTCGCCTTCTGTTTCT | CAACACGGTCCTCTTCCCTC |
| Cg1g006040 | AAGCCAGGTTCTGAGAGCAC | TCACTGCTGATGTGTCGGTC |
| Cg4g023550 | GCTCAAGAAACCCCCAGACA | GGGTAATTTGGCCGTCGGTA |
| Cg6g013340 | ACGTATGAGGCAAGGTGTGG | TCGTGGGCAGAAACCTCTTC |
| Cg1g011620 | CAGTGGAGGTGGTGGTCAAG | AATGACTGGCCTCCATTGGC |
| Cg7g010980 | TGGAATCCTTGTGTCTCGGC | TGATCCAGGGGGAAGGGAAT |
| Cg9g001040 | CTCCTCTCGCCCTCCATCTA | CAGGAACGAAAACGGAACGG |
| Cg6g016490 | TGGTGATGAAGTTGGGTCCG | TCCAGCATAGCCCTCGAAAC |
| Cg8g002960 | ATGACTCCACAAGAGGCTGC | TCTGCTACATCTGCCTCCCT |
| Cg9g000740 | CCGAGTTCAAAAGCACGCAA | GCCGAGGCTTTATTGGCTTG |
| Cg1g019920 | ATGGCATCTCTCCAAGCGAC | GCTTTTTCCGGCGAATGGTT |
| Cg5g037790 | CAACTCACCCTTCGCTGCTA | TGGTGTTCATCGGAGAACGG |
| Cg7g011250 | GCATCCCGTCCGGTTTCTAT | ATAACTCATGCTGCTGCGGT |
Table 1 Primer information for qRT-PCR analysis
| 基因ID或NCBI登录号 Gene ID or NCBI accession No. | 正向序列(5′-3′) Forward sequence | 反向序列(5′-3′) Reverse sequence |
|---|---|---|
| GQ389668.1 | TTCTCACTGAGGCTCCCCTT | AGAGAGAAAGCACAGCCTGG |
| Cg4g006180 | AAGTGCGTTTGCGATTTGCT | AGCTGACCTTGGTACCGTTG |
| Cg5g014530 | GATGGAAGACCCACCCCAAG | TCACCATTCCTGGCGACAAA |
| Cg7g023650 | CCACCTCGCCTTCTGTTTCT | CAACACGGTCCTCTTCCCTC |
| Cg1g006040 | AAGCCAGGTTCTGAGAGCAC | TCACTGCTGATGTGTCGGTC |
| Cg4g023550 | GCTCAAGAAACCCCCAGACA | GGGTAATTTGGCCGTCGGTA |
| Cg6g013340 | ACGTATGAGGCAAGGTGTGG | TCGTGGGCAGAAACCTCTTC |
| Cg1g011620 | CAGTGGAGGTGGTGGTCAAG | AATGACTGGCCTCCATTGGC |
| Cg7g010980 | TGGAATCCTTGTGTCTCGGC | TGATCCAGGGGGAAGGGAAT |
| Cg9g001040 | CTCCTCTCGCCCTCCATCTA | CAGGAACGAAAACGGAACGG |
| Cg6g016490 | TGGTGATGAAGTTGGGTCCG | TCCAGCATAGCCCTCGAAAC |
| Cg8g002960 | ATGACTCCACAAGAGGCTGC | TCTGCTACATCTGCCTCCCT |
| Cg9g000740 | CCGAGTTCAAAAGCACGCAA | GCCGAGGCTTTATTGGCTTG |
| Cg1g019920 | ATGGCATCTCTCCAAGCGAC | GCTTTTTCCGGCGAATGGTT |
| Cg5g037790 | CAACTCACCCTTCGCTGCTA | TGGTGTTCATCGGAGAACGG |
| Cg7g011250 | GCATCCCGTCCGGTTTCTAT | ATAACTCATGCTGCTGCGGT |
Fig. 1 Changes in peel color and pigment contents of Thai green pomelo fruit under different storage temperatures Different lowercase letters in the same time indicate significant differences among different treatments at 0.05 level. The same below. Picture was captured at 15 d of storage
| 样品编号 Sample No. | 过滤后读数 Clean reads | 过滤后碱基 Clean bases | GC含量/% GC content | Q30/% | 与参考基因组比对率/% Mapping rate with reference genome |
|---|---|---|---|---|---|
| 0 d-1 | 20 564 027 | 6 146 144 541 | 43.49 | 94.96 | 94.17 |
| 0 d-2 | 27 004 938 | 8 079 620 406 | 43.41 | 95.30 | 94.63 |
| 0 d-3 | 23 629 673 | 7 067 692 753 | 43.44 | 95.21 | 94.37 |
| 5 ℃-5 d-1 | 24 140 969 | 7 220 605 293 | 43.27 | 95.12 | 94.20 |
| 5 ℃-5 d-2 | 24 681 155 | 7 378 754 202 | 43.35 | 95.37 | 94.21 |
| 5 ℃-5 d-3 | 21 490 523 | 6 425 191 037 | 43.31 | 95.26 | 93.69 |
| 15 ℃-5 d-1 | 22 867 564 | 6 831 377 959 | 43.78 | 95.51 | 95.51 |
| 15 ℃-5 d-2 | 25 270 981 | 7 554 985 484 | 43.59 | 95.57 | 95.49 |
| 15 ℃-5 d-3 | 26 875 686 | 8 030 082 353 | 43.70 | 95.58 | 95.35 |
| 25 ℃-5 d-1 | 24 902 945 | 7 450 669 476 | 43.52 | 95.20 | 92.84 |
| 25 ℃-5 d-2 | 19 951 247 | 5 967 907 384 | 43.55 | 94.24 | 92.64 |
| 25 ℃-5 d-3 | 25 254 884 | 7 551 251 030 | 43.53 | 95.11 | 92.62 |
Table 2 Overview of sequencing data
| 样品编号 Sample No. | 过滤后读数 Clean reads | 过滤后碱基 Clean bases | GC含量/% GC content | Q30/% | 与参考基因组比对率/% Mapping rate with reference genome |
|---|---|---|---|---|---|
| 0 d-1 | 20 564 027 | 6 146 144 541 | 43.49 | 94.96 | 94.17 |
| 0 d-2 | 27 004 938 | 8 079 620 406 | 43.41 | 95.30 | 94.63 |
| 0 d-3 | 23 629 673 | 7 067 692 753 | 43.44 | 95.21 | 94.37 |
| 5 ℃-5 d-1 | 24 140 969 | 7 220 605 293 | 43.27 | 95.12 | 94.20 |
| 5 ℃-5 d-2 | 24 681 155 | 7 378 754 202 | 43.35 | 95.37 | 94.21 |
| 5 ℃-5 d-3 | 21 490 523 | 6 425 191 037 | 43.31 | 95.26 | 93.69 |
| 15 ℃-5 d-1 | 22 867 564 | 6 831 377 959 | 43.78 | 95.51 | 95.51 |
| 15 ℃-5 d-2 | 25 270 981 | 7 554 985 484 | 43.59 | 95.57 | 95.49 |
| 15 ℃-5 d-3 | 26 875 686 | 8 030 082 353 | 43.70 | 95.58 | 95.35 |
| 25 ℃-5 d-1 | 24 902 945 | 7 450 669 476 | 43.52 | 95.20 | 92.84 |
| 25 ℃-5 d-2 | 19 951 247 | 5 967 907 384 | 43.55 | 94.24 | 92.64 |
| 25 ℃-5 d-3 | 25 254 884 | 7 551 251 030 | 43.53 | 95.11 | 92.62 |
Fig. 3 KEGG enrichment analysis of differentially expressed genes obtained from comparisons before and after storage of Thai green pomelo under different storage temperatures
Fig. 5 Gene modules closely related to peel color and gene enrichment analysis A:Dynamic cluster tree;B:The correlation between modules and traits;C-E:Gene functional enrichment in magenta,brown and yellow module,respectively
Fig. 6 Functional enrichment analysis of DEGs upregulated by storage at 15 ℃ and 25 ℃ A:Functional enrichment of upregulated DEGs from 5 ℃-5 d vs. 15 ℃-5 d comparison group;B:Functional enrichment of upregulated DEGs from 5 ℃-5 d vs. 25 ℃-5 d comparison group;C:Functional enrichment of overlapping DEGs in two comparison groups
Fig. 7 Identification of transcription factors closely related to fruit peel de-greening A:A set of differentially expressed genes positively correlated with fruit peel de-greening;B:KEGG enrichment analysis of gene set;C:The number of transcription factors in different families
Fig. 8 The expression patterns of representative bHLH,MYB and ERF transcription factors gene closely related to fruit peel de-greening A-C:The expression patterns of three representative bHLH genes;D-F:The expression patterns of three representative MYB genes;G-I:Expression patterns of three representative ERF genes
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