Whole-Genome Identification of the CNGC Gene Family in Cymbidium ensifolium and Transcriptional Reponses Under Abiotic Stresses

doi:10.16420/j.issn.0513-353x.2024-0952

Acta Horticulturae Sinica ›› 2026, Vol. 53 ›› Issue (1): 131-148.doi: 10.16420/j.issn.0513-353x.2024-0952

• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles

Whole-Genome Identification of the CNGC Gene Family in Cymbidium ensifolium and Transcriptional Reponses Under Abiotic Stresses

ZHU Xuanyi¹, ZHAO Yuqing¹, TANG Feihong¹, WU Haiyan¹, ZHANG Chun³, ZHAO Kai², PENG Donghui¹, LAN Siren¹, ZHOU Yuzhen¹^,^*()

¹ The Strait Floral Industry Science and Technology Innovation Hub， Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization，College of Landscape Architecture and Art，Fujian Agriculture and Forestry University， Fuzhou 350002， China
² College of Life Sciences， Fujian Normal University， Fuzhou 350117， China
³ The Forestry Science and Technology Extension Station， Zhangzhou， Fujian 363000， China

Received:2025-03-13 Revised:2025-09-02 Online:2026-01-25 Published:2026-01-26
Contact: ZHOU Yuzhen

Abstract

Abstract:

To further investigate the functional roles of the Cymbidium ensifolium CNGC gene family，a systematic identification and in-depth analysis were conducted utilizing whole-genome data. A total of 13 CeCNGC genes containing CNBD，CaMBD，and IQ motifs were identified，which were classified into five subfamilies. These genes were unevenly distributed across 10 chromosomes，with two pairs of segmental duplications detected. The promoter regions of these genes harbor a large number of cis-acting elements closely associated with hormone responses and abiotic stress regulation. Additionally，their regulatory sequences harbor multiple miRNA binding sites related to abiotic stress responses. Expression analysis revealed that CeCNGC genes were transcribed across different tissues and floral developmental stages，with CeCNGC3/5/10/11/12/13 exhibiting significant tissue-specific transcription patterns. Under drought，low-temperature，and ABA treatments，all CeCNGC genes responded to varying degrees. During drought stress，CeCNGC1/4/5/8/13/10/12/9/11 were up-regulated on the third day，among which CeCNGC1/4/13 exhibited the most significant up-regulation. In contrast，CeCNGC2/3/6/7 were significantly down-regulated on the second day. Under low-temperature stress，the expression levels of CeCNGC2/4/5/7 continuously increased from day 3 to 7. In response to ABA treatment，the expression levels of CeCNGC9/10/12/13 were significantly up-regulated on the first day，whereas CeCNGC1/4/7 were significantly up-regulated on the third day. Notably，CeCNGC2 exhibited a consistent expression pattern under both low-temperature and ABA treatments，with strong induction observed in both conditions.

Key words: Cymbidium ensifolium, CNGC genes, expression patterns, abiotic stress

ZHU Xuanyi, ZHAO Yuqing, TANG Feihong, WU Haiyan, ZHANG Chun, ZHAO Kai, PENG Donghui, LAN Siren, ZHOU Yuzhen. Whole-Genome Identification of the CNGC Gene Family in Cymbidium ensifolium and Transcriptional Reponses Under Abiotic Stresses[J]. Acta Horticulturae Sinica, 2026, 53(1): 131-148.

Figures/Tables 12

References 43

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引物名称 Primer name	正向引物（5′-3′） Forward primer	反向引物（5′-3′） Reverse primer
CeCNGC1	AGCCTATCAGACTCCTTCCACCTTG	CGAGCTTCCTTCCTGGCACTTG
CeCNGC2	CTTCGTAATCCTTCCGCTTCCTCAG	GGTACACCTTCGGCAAGAACTGG
CeCNGC3	AACGGTGAAGGCATTATCTGAGGTG	GCTTGCTATGGAGTCTGCGGAAC
CeCNGC4	AGATGCGATATGCGAGCGATTAGTC	TCGTCCACTGGGTCACCTTCC
CeCNGC5	ACAGTGAAGGCATTGTCGGAAGTC	TGAAGGTGTGCTGGAGTTGCTTAC
CeCNGC6	AGTACAAGTGGTTGGCAACTCAAGG	GAGGCAGAGATGTCGCTTAATGTCC
CeCNGC7	CAGGTTGTTCTATGGGTGGCAGTAC	CGGAGGAAGGAGATGGAGTGGTAG
CeCNGC8	GTGGGAGCGGGCACTTTGATG	AGAGAAGCAAGCACTGGCATTAGG
CeCNGC9	CACAGAGAGCATCTTCGTCGTCAG	TCGCCGCAGAAATCGCCTTG
CeCNGC10	CACCGAGAGCACTTACATTGTCAGG	AAGCCACTCCTCCCACCATCAG
CeCNGC11	GAGGTGCTTGCTGGTACTTACTTGG	GAAGTTGTGGTGCCGTAGTAGATGG
CeCNGC12	GGAGCACCGCCCTGTCTTTATATG	CACGTAAGCCATCCTCATCTGTAGC
CeCNGC13	CGTCGGCACAAGAGAAGGAAGATG	TCGCTTGGCTCTCCGCTCTC
TUB	GCAGTTTACGGCGATGTTCA	ACTCTTCCTCGTCAGCTGTG

引物名称 Primer name	正向引物（5′-3′） Forward primer	反向引物（5′-3′） Reverse primer
CeCNGC1	AGCCTATCAGACTCCTTCCACCTTG	CGAGCTTCCTTCCTGGCACTTG
CeCNGC2	CTTCGTAATCCTTCCGCTTCCTCAG	GGTACACCTTCGGCAAGAACTGG
CeCNGC3	AACGGTGAAGGCATTATCTGAGGTG	GCTTGCTATGGAGTCTGCGGAAC
CeCNGC4	AGATGCGATATGCGAGCGATTAGTC	TCGTCCACTGGGTCACCTTCC
CeCNGC5	ACAGTGAAGGCATTGTCGGAAGTC	TGAAGGTGTGCTGGAGTTGCTTAC
CeCNGC6	AGTACAAGTGGTTGGCAACTCAAGG	GAGGCAGAGATGTCGCTTAATGTCC
CeCNGC7	CAGGTTGTTCTATGGGTGGCAGTAC	CGGAGGAAGGAGATGGAGTGGTAG
CeCNGC8	GTGGGAGCGGGCACTTTGATG	AGAGAAGCAAGCACTGGCATTAGG
CeCNGC9	CACAGAGAGCATCTTCGTCGTCAG	TCGCCGCAGAAATCGCCTTG
CeCNGC10	CACCGAGAGCACTTACATTGTCAGG	AAGCCACTCCTCCCACCATCAG
CeCNGC11	GAGGTGCTTGCTGGTACTTACTTGG	GAAGTTGTGGTGCCGTAGTAGATGG
CeCNGC12	GGAGCACCGCCCTGTCTTTATATG	CACGTAAGCCATCCTCATCTGTAGC
CeCNGC13	CGTCGGCACAAGAGAAGGAAGATG	TCGCTTGGCTCTCCGCTCTC
TUB	GCAGTTTACGGCGATGTTCA	ACTCTTCCTCGTCAGCTGTG

基因名 Gene name	基因ID Gene ID	编码序列长度/bp CDS length	氨基酸数 Number of amino acids	分子量/D Molecular weight	等电点 pI
CeCNGC1	JL014344	1 461	488	55 806.43	8.23
CeCNGC2	JL001908	2 200	735	82 623.44	9.56
CeCNGC3	JL010106	1 029	343	40 046.06	9.14
CeCNGC4	JL001369	1 591	531	60 926.40	8.34
CeCNGC5	JL000073	2 105	703	81 211.91	8.94
CeCNGC6	JL006714	1 497	501	58 400.86	9.60
CeCNGC7	JL008860	1 869	625	71 627.58	9.35
CeCNGC8	JL007202	2 268	759	86 931.94	9.25
CeCNGC9	JL005182	879	293	34 538.52	9.81
CeCNGC10	JL002960	2 174	726	83 914.57	9.11
CeCNGC11	JL010726	1 953	653	74 573.27	9.70
CeCNGC12	JL019980	2 146	717	81 825.83	9.43
CeCNGC13	JL019514	1 313	438	50 481.31	8.94
基因名 Gene name	基因ID Gene ID	不稳定系数 Instability index	脂肪系数 Aliphatic index	总平均亲水系数 Grand average of hydropathicity	亚细胞定位 Subcellular localization
CeCNGC1	JL014344	41.29	80.39	-0.251	叶绿体Chloroplast
CeCNGC2	JL001908	58.92	92.49	0.019	质膜Plasma membrane
CeCNGC3	JL010106	54.80	79.91	-0.457	叶绿体Chloroplast
CeCNGC4	JL001369	43.95	90.19	-0.158	质膜Plasma membrane
CeCNGC5	JL000073	50.71	95.68	-0.103	质膜Plasma membrane
CeCNGC6	JL006714	50.76	92.26	-0.103	叶绿体Chloroplast
CeCNGC7	JL008860	50.00	96.74	0.012	质膜Plasma membrane
CeCNGC8	JL007202	42.34	89.80	-0.129	质膜Plasma membrane
CeCNGC9	JL005182	67.42	80.48	-0.616	细胞核nucleus
CeCNGC10	JL002960	54.21	87.34	-0.240	质膜Plasma membrane
CeCNGC11	JL010726	55.62	87.35	-0.270	质膜Plasma membrane
CeCNGC12	JL019980	56.53	93.05	0.041	质膜Plasma membrane
CeCNGC13	JL019514	53.37	76.64	-0.432	叶绿体Chloroplast

基因名 Gene name	基因ID Gene ID	编码序列长度/bp CDS length	氨基酸数 Number of amino acids	分子量/D Molecular weight	等电点 pI
CeCNGC1	JL014344	1 461	488	55 806.43	8.23
CeCNGC2	JL001908	2 200	735	82 623.44	9.56
CeCNGC3	JL010106	1 029	343	40 046.06	9.14
CeCNGC4	JL001369	1 591	531	60 926.40	8.34
CeCNGC5	JL000073	2 105	703	81 211.91	8.94
CeCNGC6	JL006714	1 497	501	58 400.86	9.60
CeCNGC7	JL008860	1 869	625	71 627.58	9.35
CeCNGC8	JL007202	2 268	759	86 931.94	9.25
CeCNGC9	JL005182	879	293	34 538.52	9.81
CeCNGC10	JL002960	2 174	726	83 914.57	9.11
CeCNGC11	JL010726	1 953	653	74 573.27	9.70
CeCNGC12	JL019980	2 146	717	81 825.83	9.43
CeCNGC13	JL019514	1 313	438	50 481.31	8.94
基因名 Gene name	基因ID Gene ID	不稳定系数 Instability index	脂肪系数 Aliphatic index	总平均亲水系数 Grand average of hydropathicity	亚细胞定位 Subcellular localization
CeCNGC1	JL014344	41.29	80.39	-0.251	叶绿体Chloroplast
CeCNGC2	JL001908	58.92	92.49	0.019	质膜Plasma membrane
CeCNGC3	JL010106	54.80	79.91	-0.457	叶绿体Chloroplast
CeCNGC4	JL001369	43.95	90.19	-0.158	质膜Plasma membrane
CeCNGC5	JL000073	50.71	95.68	-0.103	质膜Plasma membrane
CeCNGC6	JL006714	50.76	92.26	-0.103	叶绿体Chloroplast
CeCNGC7	JL008860	50.00	96.74	0.012	质膜Plasma membrane
CeCNGC8	JL007202	42.34	89.80	-0.129	质膜Plasma membrane
CeCNGC9	JL005182	67.42	80.48	-0.616	细胞核nucleus
CeCNGC10	JL002960	54.21	87.34	-0.240	质膜Plasma membrane
CeCNGC11	JL010726	55.62	87.35	-0.270	质膜Plasma membrane
CeCNGC12	JL019980	56.53	93.05	0.041	质膜Plasma membrane
CeCNGC13	JL019514	53.37	76.64	-0.432	叶绿体Chloroplast

Whole-Genome Identification of the CNGC Gene Family in Cymbidium ensifolium and Transcriptional Reponses Under Abiotic Stresses

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