| [1] |
Bolyen E, Rideout J R, Dillon M R, Bokulich N A, Abnet C C, Al-Ghalith G A, Alexander H, Alm E J, Arumugam M, Asnicar F, Bai Y, Bisanz J E, Bittinger K, Brejnrod A, Brislawn C J, Brown C T, Callahan B J, Caraballo-Rodríguez A M, Chase J, Cope E K, Da S R, Diener C, Dorrestein P C, Douglas G M, Durall D M, Duvallet C, Edwardson C F, Ernst M Estak. 2019. Reproducible,interactive,scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology, 37 (8):852-857.
doi: 10.1038/s41587-019-0209-9
pmid: 31341288
|
| [2] |
Callahan B J, McMurdie P J, Rosen M J, Han A W, Johnson A J, Holmes S P. 2016. DADA2:High-resolution sample inference from Illumina amplicon data. Nature Methods, 13 (7):581-583.
doi: 10.1038/NMETH.3869
|
| [3] |
Chandwani S, Dewala S, Chavan S M, Paul D, Kumar K, Amaresan N. 2023. Genomic,LC-MS,and FTIR analysis of plant probiotic potential of bacillus albus for managing Xanthomonas oryzae via different modes of application in rice(Oryza sativa L.). Probiotics and Antimicrobial Proteins, 16 (5):1541-1552.
doi: 10.1007/s12602-023-10120-3
pmid: 37462829
|
| [4] |
Corné M J P, Christos Z, Roeland L, David M W, Saskia C V W, Peter A H B. 2014. Induced systemic resistance by beneficial microbes. Annual Review of Phytopathology, 52 (1):347-375.
doi: 10.1146/phyto.2014.52.issue-1
URL
|
| [5] |
D'Angelo T, Goordial J, Lindsay M R, McGonigle J, Booker A, Moser D, Stepanauskus R, Orcutt B N. 2023. Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. The Isme Journal, 17 (6):891-902.
doi: 10.1038/s41396-023-01397-x
URL
|
| [6] |
Dhananjaya P S, Sudarshan M, Lovkush S R, Ratna P, Birinchi K S, Nagendra R. 2024. Roots of resistance:unraveling microbiome-driven plant immunity. Plant Stress,14:100661.
|
| [7] |
Elizabeth J W, Ian D W, Helen G, Georgios T, Robert S P, John S, Elaine H, Jeremy K N. 2010. Global metabolic profiling procedures for urine using UPLC-MS. Nature Protocols, 5 (6):1005-1018.
doi: 10.1038/nprot.2010.50
pmid: 20448546
|
| [8] |
Fabio G, Tom S, Miguel A V G, Frédéric L, Rémy D, Marc D, Laura L, Jonas D, Gipsi L M, Guan Z, Christian S, Francesco R. 2025. TamL is a key player of the outer membrane homeostasis in Bacteroidota. Journal of Molecular Biology, 437 (10):169063.
doi: 10.1016/j.jmb.2025.169063
URL
|
| [9] |
Graindorge S, Villette C, Koechler S, Groh C, Sophie C, Mercier P, Magerand R, Peyret P, Heintz D, Schaller H, Florence A. 2022. Flavonoid-attracted Aeromonas sp. from the Arabidopsis root microbiome enhances plant dehydration resistance. Multidisciplinary Journal of Microbial Ecology, 16 (11):2622-2632.
|
| [10] |
Huang Xun, Liu Xia, Deng Linmei, Wang Xingguo, Xu Yajin, Yang Yanli. 2025. Identification of biocontrol and plant growth-promoting bacteria 1X1Y for potato scab and study on its biocontrol and plant growth-promoting characteristics. Acta Horticulturae Sinica, 52 (1):229-246. (in Chinese)
|
|
黄勋, 刘霞, 邓琳梅, 王兴国, 徐亚锦, 杨艳丽. 2025. 马铃薯疮痂病生防菌1X1Y的鉴定及其生防促生特性研究. 园艺学报, 52 (1):229-246.
doi: 10.16420/j.issn.0513-353x.2023-0647
|
| [11] |
Jiang Shunshun, Chu Mengyu, Yang Jinxi, Gao Mengjie, Fang Zhiguo, Wu Lei, Ren Xuesong, Li Qinfei, Song Hongyuan, Si Jun. 2025. Creation of new materials with high resistance to clubroot disease through interspecific hybridization and gene pyramiding in Brassica. Acta Horticulturae Sinica, 52 (5):1271-1284. (in Chinese)
doi: 10.16420/j.issn.0513-353x.2024-0913
|
|
蒋顺顺, 初梦玉, 杨槿曦, 高梦杰, 方治国, 吴磊, 任雪松, 李勤菲, 宋洪元, 司军. 2025. 芸薹属种间杂交聚合创制高抗根肿病新材料. 园艺学报, 52 (5):1271-1284.
doi: 10.16420/j.issn.0513-353x.2024-0913
|
| [12] |
Li L, Huang D, Hu Y, Rudling N M, Canniffe D P, Wang F, Wang Y. 2023. Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. Nature Communications, 14 (1):6450.
doi: 10.1038/s41467-023-42193-7
|
| [13] |
Li P, Lü S, Zhang Z, Su T, Wang W, Xin X, Zhao X, Li X, Zhang D, Yu Y, Ma T, Liu G, Zhang F, Yu S. 2025. Genome assembly of the plant pathogen Plasmodiophora brassicae reveals novel secreted proteins contributing to the infection of Brassica rapa. Horticultural Plant Journal, 11 (3):1125-1139.
doi: 10.1016/j.hpj.2023.09.001
URL
|
| [14] |
Li Shiyang, Chen Yangfeng, Nie Xiaoying, Li Ziqiang, Wu Nancheng, Xiao Shengen. 2020. Study on the correlation between aboveground and underground parts of bletilla striata during the seedling stage in field environment. Crop Research, 34 (4):338-342. (in Chinese)
|
|
李诗阳, 陈阳峰, 聂小英, 李自强, 吴念庆, 肖深根. 2020. 大田环境下白及苗期地上部与地下部相关性研究. 作物研究, 34 (4):338-342.
|
| [15] |
Liu S, Luo G, Wu G, Fan B, Liu W, Tan H, Hu X. 2025. Impact of commercial probiotics(Bacillus subtilis)addition during biofloc start-up:water quality,nitrogen conversion,nutrition and microbial community. Aquaculture,609:742845.
|
| [16] |
María d M Q C, Pedro J C Y, Jose M H M, Francisco R V, Pilar G B. 2025. The type IV secretion system of Patescibacteria is homologous to the bacterial monoderm conjugation machinery. Microbial Genomics, 11 (5):001409.
|
| [17] |
Murphy C L, Yang R, Decker T, Cavalliere C, Andreev V, Bircher N, Cornell J, Dohmen R, Pratt C J, Grinnell A, Higgs J, Jett C, Gillett E, Khadka R, Mares S, Meili C, Liu J, Mukhtar H, Elshahed Mostafa S, Youssef Noha H. 2021. Genomes of novel Myxococcota reveal severely curtailed machineries for predation and cellular differentiation. Applied and Environmental Microbiology, 87 (23):170621.
|
| [18] |
Ongena M, Jacques P, Touré Y, Destain J, Jabrane A, Thonart P. 2005. Involvement of fengycin-type lipopeptides in the multifaceted biocontrol potential of Bacillus subtilis. Applied Microbiology and Biotechnology, 69 (1):29-38.
pmid: 15742166
|
| [19] |
Riedlmeier M, Ghirardo A, Wenig M, Knappe C, Koch K, Georgii E, Vlot A C. 2017. Monoterpenes support systemic acquired resistance within and between plants. The Plant Cell, 29 (6):1440-1459.
doi: 10.1105/tpc.16.00898
pmid: 28536145
|
| [20] |
Ronald G, Alexander P, Chantal D B, Johanna L, Sebastian W, Christine W, Judith B, Boyke B, Jake H, Antonia P G, Joy B, Ulrich N, Thomas P, Thorsten B, Rolf M. 2024. Discovery of the Pendulisporaceae:an extremotolerant myxobacterial family with distinct sporulation behavior and prolific specialized metabolism. Chem, 10 (8):2518-2537.
doi: 10.1016/j.chempr.2024.04.019
URL
|
| [21] |
Shailaja K P, Nawal S, Andrew A, Thomas K, Constance B B, Paul D B, Cole S. 2025. Establishing conserved biosynthetic gene clusters of the phylum Myxococcota. Applied and Environmental Microbiology,DOI: 10.1128/aem.02151-25.
|
| [22] |
Sun Yanchao, Yang Taixin, Yuan Mengjia. 2020. Study on the correlation between cold resistance and its correlation with physiological index of different Bupleurum chinense germplasms. Journal of Chinese Medicinal Materials, 43 (1):5-8. (in Chinese)
|
|
孙延超, 杨太新, 袁梦佳. 2020. 不同柴胡种质抗寒性及其与生理指标的相关性研究. 中药材, 43 (1):5-8.
|
| [23] |
Supajit S, Bagher J. 2025. Exploring genetic diversity and genomic insights of Bacillus subtilis isolates from cassava rhizosphere using molecular barcoding and whole genome sequencing. Scientific Reports, 15 (1):22708.
doi: 10.1038/s41598-025-08736-2
|
| [24] |
Wang J, Zhang T, Shen X, Liu J, Zhao D, Sun Y, Wang L, Liu Y, Gong X, Liu Y, Zhu Z, Xue F. 2016. Serum metabolomics for early diagnosis of esophageal squamous cell carcinoma by UHPLC-QTOF/MS. Metabolomics, 12 (7):116.
doi: 10.1007/s11306-016-1050-5
URL
|
| [25] |
Wang Jinling, Pan Yue, Li Siyu, Shen Xinyao, Liu Lijun. 2026. The effects of Bacillus subtilis and Trichoderma harzianum on rice grain quality. Crop Journal,(2):202-208. (in Chinese)
|
|
王金玲, 潘越, 李思宇, 沈炘垭, 刘立军. 2026. 枯草芽孢杆菌和哈茨木霉菌对水稻稻米品质的影响. 作物杂志,(2):202-208.
|
| [26] |
Warwick B D, David B, Paul B, Eva Z, Sue F M, Nadine A, Marie B, Joshau D K, Antony H, John N H, Andrew W N, Ian D W, Douglas B K, Royston G. 2011. Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nature Protocols, 6 (7):1060-1083.
doi: 10.1038/nprot.2011.335
pmid: 21720319
|
| [27] |
Wei H, Duan R, Qian D, Yang H, Zhang Y, Meng F, Lin Y. 2025. Effects of biochar immobilization Bacillus subtilis on the heavy metal accumulation,rhizosphere microorganisms and metabolism in rice. Journal of Applied Microbiology, 136 (4):1-11.
|
| [28] |
Wen Hongxia, Lü Weina, Li Ying, Zhao Yan, Yang Li, Zhang Shaolan, Zhang Fang, Gao Haitao. 2025. Study on the relationship between seed vigor and related enzymes of three wheat varieties. Tillage and Cultivation, 45 (4):15-18. (in Chinese)
|
|
温红霞, 吕维娜, 李影, 赵严, 杨莉, 张少澜, 张芳, 高海涛. 2025. 3个小麦品种的种子活力与其相关酶关系研究. 耕作与栽培, 45 (4):15-18.
|
| [29] |
Wu Jiabing. 2023. The role of core microorganisms mediated by buckwheat in the control of clubroot disease in cabbage[M. D. Dissertation]. Chongqing: Southwest University. (in Chinese)
|
|
吴嘉炳. 2023. 荞麦介导的核心微生物在防控甘蓝根肿病中的作用[硕士论文]. 重庆: 西南大学.
|
| [30] |
Yao X, Hu B. 2024. Methane-dependent denitrification by Methylomirabilis:an indirect nitrous oxide sink? Trends in microbiology, 32 (11):1053-1057.
doi: 10.1016/j.tim.2024.07.008
URL
|
| [31] |
Yao X, Wang J, He M, Liu Z, Zhao Y, Li Y, Chi T, Zhu L, Zheng Ping, Mike S M J, Hu B. 2024. Methane-dependent complete denitrification by a single Methylomirabilis bacterium. Nature Microbiology, 9 (2):464-476.
doi: 10.1038/s41564-023-01578-6
|
| [32] |
Xiao J, Nakamura Y, Wu Z, Fu W, Chen Y, Lou Y, Baldwin I, Boland W, Li R. 2025. A synthetic jasmonate receptor agonist uncouples the growth-defense trade-off in rice. Proceedings of the National Academy of Sciences of the United States of America, 122 (24):e2505675122.
|
| [33] |
Yang Limei, Fang Zhiyuan, Zhang Yangyong, Zhuang Mu, Lü Honghao, Wang Yong, Ji Jialei, Liu Yumei, Li Zhansheng, Han Fengqing. 2020. Recent research progress in genetic breeding for disease resistance and stress tolerance in chinese head lettuce. Acta Horticulturae Sinica, 47 (9):1678-1688. (in Chinese)
|
|
杨丽梅, 方智远, 张扬勇, 庄木, 吕红豪, 王勇, 季家磊, 刘玉梅, 李占省, 韩风庆. 2020. 中国结球甘蓝抗病抗逆遗传育种近年研究进展. 园艺学报, 47 (9):1678-1688.
|
| [34] |
Yuan Huitao, Zhang Yunxia, Xiang Meimei, Luo Mei, Dong Zhangyong. 2021. Screening of resistant varieties to peanut black rot and determination of enzyme activities related to resistance. Journal of Nuclear Agricultural Sciences, 35 (10):2258-2266. (in Chinese)
doi: 10.11869/j.issn.100-8551.2021.10.2258
|
|
袁汇涛, 张云霞, 向梅梅, 罗梅, 董章勇. 2021. 花生黑腐病抗病品种筛选及抗病相关酶活性测定. 核农学报, 35 (10):2258-2266.
doi: 10.11869/j.issn.100-8551.2021.10.2258
|
| [35] |
Zheng Jingyi, Li Xiaonan, Piao Zhongyun. 2025. Advances in the mechanisms of host resistance to clubroot disease in brassica crops facilitated by multi-omics approaches. Acta Horticulturae Sinica, 52 (5):1213-1232. (in Chinese)
doi: 10.16420/j.issn.0513-353x.2025-0153
|
|
郑敬一, 李晓楠, 朴钟云. 2025. 多组学助力十字花科芸薹属寄主抗根肿病机制研究进展. 园艺学报, 52 (5):1213-1232.
doi: 10.16420/j.issn.0513-353x.2025-0153
|