番茄抗旱性的全基因组关联分析

doi:10.16420/j.issn.0513-353x.2023-0694

园艺学报 ›› 2024, Vol. 51 ›› Issue (2): 229-238.doi: 10.16420/j.issn.0513-353x.2023-0694

• 遗传育种·种质资源·分子生物学 • 上一篇下一篇

番茄抗旱性的全基因组关联分析

董舒超¹^,², 洪骏³, 凌嘉怡¹^,⁴, 谢紫欣¹^,⁵, 张胜军⁶, 赵丽萍¹^,², 宋刘霞¹^,², 王银磊¹^,², 赵统敏¹^,²^,^*()

¹ 江苏省农业科学院蔬菜研究所，南京 210014
² 江苏省高效园艺作物遗传改良重点实验室，南京 210014
³ 沙漠农业研究中心，阿卜杜拉国王科技大学，沙特吉达 23955
⁴ 扬州大学园艺园林学院，江苏扬州 225100
⁵ 南京农业大学园艺学院，南京 210095
⁶ 伊犁哈萨克自治州农业科学研究所，新疆伊宁 835000

收稿日期:2023-09-12 修回日期:2023-10-26 出版日期:2024-02-25 发布日期:2024-02-26
通讯作者:
*E-mail：tmzhaomail@163.com
基金资助:
江苏省自然科学基金青年基金项目(BK20220743); 国家自然科学基金青年科学基金项目(32202489); 江苏省重点研发计划现代农业项目(BE2022339); 江苏省种业振兴揭榜挂帅项目(JBGS2021); 江苏省种业振兴揭榜挂帅项目(JBGS066); 南京市品种选育专项(202210023)

Genome-wide Association Studies of Drought Tolerance in Tomato

DONG Shuchao¹^,², HONG Jun³, LING Jiayi¹^,⁴, XIE Zixin¹^,⁵, ZHANG Shengjun⁶, ZHAO Liping¹^,², SONG Liuxia¹^,², WANG Yinlei¹^,², ZHAO Tongmin¹^,²^,^*()

¹ Institute of Vegetable Crop，Jiangsu Academy of Agricultural Sciences，Nanjing 210014，China
² Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement，Nanjing 210014，China
³ Center for Desert Agriculture，King Abdullah University of Science and Technology，Jeddah 23955，Saudi Arabia
⁴ College of Horticulture and Plant Protection，Yangzhou University，Yangzhou，Jiangsu 225100，China
⁵ College of Horticulture，Nanjing Agricultural University，Nanjing 210095，China
⁶ Institute of Agricultural Sciences of Ili Kazakh Autonomous Prefecture，Yining，Xinjiang 835000，China

Received:2023-09-12 Revised:2023-10-26 Published:2024-02-25 Online:2024-02-26

摘要/Abstract

摘要：

测定了301份番茄（Solanum lycopersicum L.）种质的叶片在离体24 h后的相对失水率，以鉴定其抗旱能力，并进行了全基因组关联分析（genome-wide association study，GWAS）。共检测到3个与番茄抗旱性显著关联的SNP位点，分别为S02.1158758、S02.1160893和S05.1426646，单个位点可以解释4.08% ~ 18.97%的表型变异。挖掘到3个与番茄抗旱性显著关联的主效SNP位点和7个候选基因，有助于解析番茄抗旱性的遗传基础及其调控机制，为番茄抗逆遗传改良奠定了基础。

关键词: 番茄, 抗旱性, 全基因组关联分析, 候选基因

Abstract:

To conduct genome-wide association studies（GWAS）of drought tolerance，the relative water loss of detached leaves was analyzed after 24 h dehydration in 301 tomato（Solanum lycopersicum L.）accessions. A total number of three SNP sites（S02.1158758，S02.1160893，and S05.1426646）significantly associated with the drought tolerance of tomato accessions were identified by GWAS. Each single locus could explain 4.08%-18.97% of the phenotypic variation. Taken together，three SNP sites and seven candidate genes significantly associated with drought tolerance in tomato were identified in this study，which will help unravel the genetic and regulatory mechanisms of tomato drought tolerance，as well as establish a foundation for the genetic improvement of tomato stress tolerance.

Key words: tomato, drought tolerance, genome-wide association studies, candidate gene

董舒超, 洪骏, 凌嘉怡, 谢紫欣, 张胜军, 赵丽萍, 宋刘霞, 王银磊, 赵统敏. 番茄抗旱性的全基因组关联分析[J]. 园艺学报, 2024, 51(2): 229-238.

DONG Shuchao, HONG Jun, LING Jiayi, XIE Zixin, ZHANG Shengjun, ZHAO Liping, SONG Liuxia, WANG Yinlei, ZHAO Tongmin. Genome-wide Association Studies of Drought Tolerance in Tomato[J]. Acta Horticulturae Sinica, 2024, 51(2): 229-238.

图/表 9

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材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss	材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss	材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss
TS-1	BIG	17.34 ± 3.08	TS-193	BIG	20.61 ± 9.03	TS-538	BIG	22.95 ± 4.08
TS-4	BIG	35.39 ± 14.82	TS-194	BIG	25.96 ± 7.61	TS-539	BIG	34.20 ± 11.03
TS-5	BIG	29.11 ± 1.22	TS-195	BIG	34.29 ± 10.33	TS-540	BIG	34.66 ± 36.88
TS-8	BIG	41.19 ± 13.35	TS-196	BIG	25.99 ± 2.34	TS-541	BIG	17.64 ± 2.76
TS-9	BIG	15.35 ± 0.94	TS-197	BIG	34.16 ± 5.44	TS-542	BIG	11.81 ± 2.69
TS-10	BIG	16.21 ± 2.15	TS-198	BIG	29.50 ± 11.40	TS-543	BIG	12.69 ± 3.70
TS-21	PIM	18.08 ± 3.13	TS-200	BIG	15.78 ± 4.90	TS-544	BIG	13.11 ± 2.81
TS-25	CER	20.78 ± 2.26	TS-201	BIG	24.99 ± 3.08	TS-545	CER	15.27 ± 1.45
TS-26	CER	28.79 ± 7.64	TS-202	CER	20.41 ± 2.67	TS-546	BIG	18.50 ± 0.99
TS-27	CER	20.07 ± 3.20	TS-203	BIG	39.72 ± 4.13	TS-547	BIG	13.17 ± 5.19
TS-29	CER	15.34 ± 3.04	TS-204	BIG	12.68 ± 2.30	TS-548	BIG	21.04 ± 1.87
TS-31	CER	21.08 ± 4.68	TS-205	CER	16.03 ± 2.76	TS-549	BIG	34.45 ± 7.69
TS-35	CER	23.93 ± 10.06	TS-206	BIG	12.16 ± 1.06	TS-550	BIG	23.60 ± 1.59
TS-36	CER	28.53 ± 6.23	TS-209	CER	25.35 ± 3.03	TS-552	CER	16.17 ± 2.94
TS-43	BIG	25.99 ± 8.12	TS-210	BIG	12.88 ± 4.00	TS-555	BIG	21.93 ± 2.10
TS-46	BIG	22.92 ± 2.21	TS-211	BIG	18.93 ± 2.34	TS-557	BIG	14.34 ± 6.03
TS-51	BIG	11.70 ± 5.41	TS-212	BIG	14.16 ± 7.06	TS-559	BIG	22.74 ± 3.69
TS-56	CER	20.01 ± 7.42	TS-214	BIG	15.90 ± 3.20	TS-560	CER	12.23 ± 3.33
TS-60	BIG	38.06 ± 13.16	TS-215	BIG	17.37 ± 11.24	TS-561	BIG	13.66 ± 1.22
TS-61	CER	14.15 ± 7.10	TS-219	CER	43.61 ± 5.89	TS-562	BIG	21.03 ± 3.52
TS-62	CER	18.63 ± 1.68	TS-221	CER	32.43 ± 10.02	TS-563	BIG	22.64 ± 4.99
TS-63	CER	25.81 ± 6.20	TS-227	CER	29.10 ± 7.70	TS-564	CER	21.96 ± 2.74
TS-64	CER	14.25 ± 3.43	TS-228	BIG	39.56 ± 18.69	TS-565	BIG	19.59 ± 5.02
TS-65	CER	18.63 ± 4.42	TS-229	CER	10.71 ± 1.28	TS-568	BIG	25.24 ± 3.84
TS-67	CER	26.35 ± 4.99	TS-232	BIG	30.83 ± 9.04	TS-569	BIG	20.01 ± 2.74
TS-68	BIG	11.65 ± 6.90	TS-236	BIG	17.43 ± 6.71	TS-570	BIG	17.00 ± 3.90
TS-72	CER	13.39 ± 2.37	TS-238	CER	49.71 ± 11.74	TS-572	BIG	13.08 ± 7.79
TS-74	BIG	20.68 ± 8.48	TS-242	BIG	12.42 ± 4.11	TS-575	BIG	21.70 ± 1.79
TS-75	CER	24.15 ± 4.83	TS-243	CER	51.11 ± 6.08	TS-576	BIG	15.64 ± 2.28
TS-78	BIG	18.96 ± 4.40	TS-245	BIG	41.02 ± 0.89	TS-577	BIG	13.92 ± 2.88
TS-81	BIG	26.62 ± 1.97	TS-248	CER	43.88 ± 4.09	TS-578	BIG	20.59 ± 7.83
TS-82	BIG	20.82 ± 8.17	TS-249	BIG	22.42 ± 2.19	TS-579	BIG	17.24 ± 5.77
TS-83	CER	20.22 ± 3.73	TS-250	CER	41.15 ± 6.53	TS-580	BIG	15.02 ± 3.05
TS-84	CER	18.17 ± 7.37	TS-252	CER	38.71 ± 5.96	TS-582	CER	16.78 ± 4.12
TS-86	BIG	12.75 ± 4.29	TS-255	BIG	14.54 ± 4.23	TS-583	BIG	16.45 ± 3.31
TS-88	BIG	17.11 ± 1.98	TS-256	BIG	26.79 ± 2.53	TS-584	BIG	18.95 ± 2.01
TS-89	BIG	43.05 ± 23.49	TS-257	CER	24.86 ± 2.18	TS-585	CER	10.43 ± 1.80
TS-91	CER	13.25 ± 7.94	TS-258	CER	25.06 ± 5.24	TS-586	BIG	23.80 ± 5.25
TS-94	CER	28.88 ± 1.92	TS-259	BIG	30.52 ± 7.48	TS-587	BIG	14.90 ± 5.84
TS-95	BIG	25.95 ± 7.28	TS-261	BIG	33.92 ± 4.27	TS-588	BIG	17.15 ± 2.27
TS-96	CER	10.08 ± 1.73	TS-263	BIG	26.88 ± 8.45	TS-589	BIG	28.11 ± 1.50
TS-98	CER	21.71 ± 2.91	TS-264	BIG	32.47 ± 6.26	TS-590	CER	22.15 ± 5.34
TS-99	CER	19.49 ± 4.96	TS-266	PIM	53.77 ± 17.66	TS-591	BIG	20.32 ± 8.73
TS-100	BIG	14.79 ± 4.50	TS-268	BIG	25.85 ± 11.10	TS-592	BIG	10.41 ± 5.03
TS-104	BIG	27.88 ± 9.65	TS-269	BIG	19.68 ± 6.01	TS-593	BIG	16.59 ± 3.66
TS-105	CER	33.48 ± 7.23	TS-270	BIG	25.85 ± 4.90	TS-594	CER	12.69 ± 6.68
TS-107	CER	19.13 ± 8.28	TS-271	CER	14.97 ± 2.93	TS-596	BIG	17.46 ± 5.30
TS-108	BIG	59.31 ± 10.48	TS-272	BIG	16.52 ± 3.98	TS-598	CER	11.53 ± 2.22
TS-109	CER	15.32 ± 1.43	TS-273	CER	20.10 ± 3.17	TS-599	BIG	12.67 ± 2.12
TS-111	BIG	18.36 ± 7.56	TS-276	BIG	12.12 ± 6.19	TS-601	CER	17.46 ± 3.90
TS-112	BIG	15.11 ± 4.81	TS-278	BIG	14.33 ± 7.67	TS-602	BIG	16.49 ± 4.09
TS-114	BIG	16.82 ± 3.66	TS-280	CER	38.37 ± 7.58	TS-604	BIG	24.21 ± 9.87
TS-118	CER	18.22 ± 10.61	TS-281	CER	27.04 ± 2.33	TS-606	BIG	19.65 ± 2.90
TS-120	CER	17.89 ± 2.94	TS-283	CER	20.78 ± 8.97	TS-609	BIG	11.97 ± 1.97
TS-122	BIG	21.99 ± 9.99	TS-286	CER	22.32 ± 3.65	TS-610	CER	16.79 ± 3.41
TS-126	BIG	27.32 ± 12.86	TS-288	BIG	20.15 ± 8.42	TS-611	BIG	20.58 ± 4.12
TS-129	CER	24.76 ± 1.62	TS-290	CER	26.86 ± 5.75	TS-612	BIG	19.94 ± 5.01
TS-131	CER	22.44 ± 1.85	TS-292	BIG	28.28 ± 3.03	TS-614	CER	37.42 ± 14.86
TS-132	BIG	36.02 ± 6.16	TS-293	BIG	27.51 ± 1.81	TS-615	CER	19.46 ± 1.31
TS-133	BIG	23.22 ± 4.56	TS-296	BIG	15.03 ± 4.55	TS-616	BIG	11.56 ± 1.44
TS-134	CER	25.39 ± 3.90	TS-297	BIG	16.59 ± 5.62	TS-617	BIG	25.78 ± 5.42
TS-136	BIG	13.79 ± 2.97	TS-298	CER	19.50 ± 5.67	TS-618	CER	19.78 ± 6.86
TS-137	BIG	15.02 ± 1.56	TS-300	CER	33.74 ± 7.59	TS-619	BIG	12.93 ± 0.40
TS-138	CER	22.25 ± 7.41	TS-301	CER	24.09 ± 2.37	TS-620	BIG	11.37 ± 2.66
TS-140	BIG	19.09 ± 1.61	TS-302	CER	18.79 ± 1.95	TS-621	BIG	25.26 ± 3.86
TS-141	BIG	26.40 ± 7.06	TS-303	CER	34.51 ± 3.13	TS-622	BIG	15.06 ± 4.53
TS-142	BIG	19.17 ± 5.75	TS-401	BIG	8.33 ± 1.12	TS-623	CER	8.62 ± 1.30
TS-143	BIG	17.71 ± 1.55	TS-411	PIM	38.47 ± 17.59	TS-624	BIG	11.51 ± 4.83
TS-147	BIG	26.61 ± 3.66	TS-413	PIM	18.62 ± 11.91	TS-625	BIG	16.41 ± 3.55
TS-150	BIG	27.34 ± 8.49	TS-419	PIM	26.05 ± 5.68	TS-626	BIG	17.82 ± 8.00
TS-151	BIG	16.05 ± 4.62	TS-420	PIM	30.59 ± 4.58	TS-627	BIG	9.53 ± 4.72
TS-152	BIG	14.95 ± 3.93	TS-450	CER	21.18 ± 4.47	TS-629	BIG	21.47 ± 5.60
TS-154	CER	26.50 ± 4.58	TS-501	BIG	23.82 ± 5.66	TS-630	BIG	11.70 ± 3.05
TS-155	BIG	16.66 ± 2.23	TS-502	BIG	22.70 ± 1.62	TS-631	BIG	11.76 ± 0.93
TS-156	PIM	15.09 ± 0.70	TS-504	BIG	18.22 ± 8.33	TS-632	BIG	24.57 ± 0.87
TS-157	BIG	20.11 ± 3.56	TS-505	BIG	24.57 ± 5.92	TS-633	BIG	15.86 ± 1.69
TS-158	CER	18.52 ± 0.82	TS-506	CER	26.37 ± 7.50	TS-635	BIG	18.45 ± 4.01
TS-160	BIG	26.63 ± 13.15	TS-507	BIG	21.67 ± 6.06	TS-636	BIG	8.90 ± 1.39
TS-161	BIG	38.15 ± 6.63	TS-508	CER	40.25 ± 16.54	TS-637	BIG	17.95 ± 4.17
TS-162	BIG	40.76 ± 8.94	TS-511	BIG	13.30 ± 5.12	TS-638	BIG	10.12 ± 3.98
TS-163	BIG	32.38 ± 9.76	TS-512	BIG	27.24 ± 1.36	TS-640	BIG	13.26 ± 1.87
TS-165	CER	21.32 ± 3.30	TS-513	BIG	15.28 ± 4.12	TS-641	BIG	12.06 ± 5.25
TS-166	BIG	57.42 ± 18.95	TS-514	BIG	16.48 ± 5.68	TS-642	BIG	22.83 ± 1.25
TS-167	BIG	45.51 ± 0.81	TS-515	BIG	20.86 ± 6.49	TS-643	BIG	20.04 ± 0.72
TS-168	BIG	21.99 ± 8.48	TS-517	BIG	21.01 ± 3.78	TS-644	BIG	19.87 ± 6.51
TS-169	BIG	18.52 ± 3.82	TS-518	BIG	10.73 ± 1.96	TS-645	BIG	35.72 ± 7.08
TS-171	BIG	26.70 ± 10.68	TS-519	BIG	14.00 ± 3.23	TS-646	BIG	15.49 ± 1.34
TS-172	BIG	20.08 ± 7.14	TS-520	BIG	38.28 ± 6.33	TS-647	BIG	13.86 ± 4.35
TS-175	BIG	17.92 ± 3.77	TS-521	BIG	28.18 ± 5.32	TS-648	BIG	19.53 ± 5.64
TS-176	BIG	20.85 ± 4.29	TS-522	BIG	27.86 ± 4.47	TS-649	BIG	14.91 ± 2.87
TS-177	BIG	14.79 ± 2.52	TS-523	BIG	49.55 ± 7.08	TS-650	BIG	13.10 ± 5.15
TS-180	BIG	27.36 ± 7.96	TS-524	BIG	41.95 ± 5.71	TS-652	CER	18.90 ± 9.23
TS-181	CER	30.77 ± 3.79	TS-525	BIG	25.44 ± 2.07	TS-653	BIG	14.59 ± 2.02
TS-182	PIM	34.30 ± 1.67	TS-526	CER	34.15 ± 9.74	TS-654	BIG	13.98 ± 1.79
TS-183	BIG	41.88 ± 8.46	TS-527	BIG	21.47 ± 3.54	TS-656	BIG	19.04 ± 3.32
TS-185	BIG	33.69 ± 11.2	TS-528	CER	16.18 ± 3.45	TS-657	CER	13.26 ± 3.90
TS-186	BIG	20.14 ± 4.72	TS-530	BIG	20.72 ± 3.06	TS-658	CER	29.87 ± 8.43
TS-187	CER	16.72 ± 3.09	TS-533	BIG	15.40 ± 1.70	TS-660	BIG	19.63 ± 3.53
TS-188	BIG	26.60 ± 1.67	TS-535	BIG	12.15 ± 2.23	TS-663	BIG	15.67 ± 0.16
TS-189	CER	23.32 ± 2.59	TS-536	CER	10.01 ± 0.24
TS-191	BIG	21.68 ± 4.07	TS-537	CER	9.73 ± 0.58

材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss	材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss	材料编号 Accession ID	分组 Group	相对失水率/% Relative water loss
TS-1	BIG	17.34 ± 3.08	TS-193	BIG	20.61 ± 9.03	TS-538	BIG	22.95 ± 4.08
TS-4	BIG	35.39 ± 14.82	TS-194	BIG	25.96 ± 7.61	TS-539	BIG	34.20 ± 11.03
TS-5	BIG	29.11 ± 1.22	TS-195	BIG	34.29 ± 10.33	TS-540	BIG	34.66 ± 36.88
TS-8	BIG	41.19 ± 13.35	TS-196	BIG	25.99 ± 2.34	TS-541	BIG	17.64 ± 2.76
TS-9	BIG	15.35 ± 0.94	TS-197	BIG	34.16 ± 5.44	TS-542	BIG	11.81 ± 2.69
TS-10	BIG	16.21 ± 2.15	TS-198	BIG	29.50 ± 11.40	TS-543	BIG	12.69 ± 3.70
TS-21	PIM	18.08 ± 3.13	TS-200	BIG	15.78 ± 4.90	TS-544	BIG	13.11 ± 2.81
TS-25	CER	20.78 ± 2.26	TS-201	BIG	24.99 ± 3.08	TS-545	CER	15.27 ± 1.45
TS-26	CER	28.79 ± 7.64	TS-202	CER	20.41 ± 2.67	TS-546	BIG	18.50 ± 0.99
TS-27	CER	20.07 ± 3.20	TS-203	BIG	39.72 ± 4.13	TS-547	BIG	13.17 ± 5.19
TS-29	CER	15.34 ± 3.04	TS-204	BIG	12.68 ± 2.30	TS-548	BIG	21.04 ± 1.87
TS-31	CER	21.08 ± 4.68	TS-205	CER	16.03 ± 2.76	TS-549	BIG	34.45 ± 7.69
TS-35	CER	23.93 ± 10.06	TS-206	BIG	12.16 ± 1.06	TS-550	BIG	23.60 ± 1.59
TS-36	CER	28.53 ± 6.23	TS-209	CER	25.35 ± 3.03	TS-552	CER	16.17 ± 2.94
TS-43	BIG	25.99 ± 8.12	TS-210	BIG	12.88 ± 4.00	TS-555	BIG	21.93 ± 2.10
TS-46	BIG	22.92 ± 2.21	TS-211	BIG	18.93 ± 2.34	TS-557	BIG	14.34 ± 6.03
TS-51	BIG	11.70 ± 5.41	TS-212	BIG	14.16 ± 7.06	TS-559	BIG	22.74 ± 3.69
TS-56	CER	20.01 ± 7.42	TS-214	BIG	15.90 ± 3.20	TS-560	CER	12.23 ± 3.33
TS-60	BIG	38.06 ± 13.16	TS-215	BIG	17.37 ± 11.24	TS-561	BIG	13.66 ± 1.22
TS-61	CER	14.15 ± 7.10	TS-219	CER	43.61 ± 5.89	TS-562	BIG	21.03 ± 3.52
TS-62	CER	18.63 ± 1.68	TS-221	CER	32.43 ± 10.02	TS-563	BIG	22.64 ± 4.99
TS-63	CER	25.81 ± 6.20	TS-227	CER	29.10 ± 7.70	TS-564	CER	21.96 ± 2.74
TS-64	CER	14.25 ± 3.43	TS-228	BIG	39.56 ± 18.69	TS-565	BIG	19.59 ± 5.02
TS-65	CER	18.63 ± 4.42	TS-229	CER	10.71 ± 1.28	TS-568	BIG	25.24 ± 3.84
TS-67	CER	26.35 ± 4.99	TS-232	BIG	30.83 ± 9.04	TS-569	BIG	20.01 ± 2.74
TS-68	BIG	11.65 ± 6.90	TS-236	BIG	17.43 ± 6.71	TS-570	BIG	17.00 ± 3.90
TS-72	CER	13.39 ± 2.37	TS-238	CER	49.71 ± 11.74	TS-572	BIG	13.08 ± 7.79
TS-74	BIG	20.68 ± 8.48	TS-242	BIG	12.42 ± 4.11	TS-575	BIG	21.70 ± 1.79
TS-75	CER	24.15 ± 4.83	TS-243	CER	51.11 ± 6.08	TS-576	BIG	15.64 ± 2.28
TS-78	BIG	18.96 ± 4.40	TS-245	BIG	41.02 ± 0.89	TS-577	BIG	13.92 ± 2.88
TS-81	BIG	26.62 ± 1.97	TS-248	CER	43.88 ± 4.09	TS-578	BIG	20.59 ± 7.83
TS-82	BIG	20.82 ± 8.17	TS-249	BIG	22.42 ± 2.19	TS-579	BIG	17.24 ± 5.77
TS-83	CER	20.22 ± 3.73	TS-250	CER	41.15 ± 6.53	TS-580	BIG	15.02 ± 3.05
TS-84	CER	18.17 ± 7.37	TS-252	CER	38.71 ± 5.96	TS-582	CER	16.78 ± 4.12
TS-86	BIG	12.75 ± 4.29	TS-255	BIG	14.54 ± 4.23	TS-583	BIG	16.45 ± 3.31
TS-88	BIG	17.11 ± 1.98	TS-256	BIG	26.79 ± 2.53	TS-584	BIG	18.95 ± 2.01
TS-89	BIG	43.05 ± 23.49	TS-257	CER	24.86 ± 2.18	TS-585	CER	10.43 ± 1.80
TS-91	CER	13.25 ± 7.94	TS-258	CER	25.06 ± 5.24	TS-586	BIG	23.80 ± 5.25
TS-94	CER	28.88 ± 1.92	TS-259	BIG	30.52 ± 7.48	TS-587	BIG	14.90 ± 5.84
TS-95	BIG	25.95 ± 7.28	TS-261	BIG	33.92 ± 4.27	TS-588	BIG	17.15 ± 2.27
TS-96	CER	10.08 ± 1.73	TS-263	BIG	26.88 ± 8.45	TS-589	BIG	28.11 ± 1.50
TS-98	CER	21.71 ± 2.91	TS-264	BIG	32.47 ± 6.26	TS-590	CER	22.15 ± 5.34
TS-99	CER	19.49 ± 4.96	TS-266	PIM	53.77 ± 17.66	TS-591	BIG	20.32 ± 8.73
TS-100	BIG	14.79 ± 4.50	TS-268	BIG	25.85 ± 11.10	TS-592	BIG	10.41 ± 5.03
TS-104	BIG	27.88 ± 9.65	TS-269	BIG	19.68 ± 6.01	TS-593	BIG	16.59 ± 3.66
TS-105	CER	33.48 ± 7.23	TS-270	BIG	25.85 ± 4.90	TS-594	CER	12.69 ± 6.68
TS-107	CER	19.13 ± 8.28	TS-271	CER	14.97 ± 2.93	TS-596	BIG	17.46 ± 5.30
TS-108	BIG	59.31 ± 10.48	TS-272	BIG	16.52 ± 3.98	TS-598	CER	11.53 ± 2.22
TS-109	CER	15.32 ± 1.43	TS-273	CER	20.10 ± 3.17	TS-599	BIG	12.67 ± 2.12
TS-111	BIG	18.36 ± 7.56	TS-276	BIG	12.12 ± 6.19	TS-601	CER	17.46 ± 3.90
TS-112	BIG	15.11 ± 4.81	TS-278	BIG	14.33 ± 7.67	TS-602	BIG	16.49 ± 4.09
TS-114	BIG	16.82 ± 3.66	TS-280	CER	38.37 ± 7.58	TS-604	BIG	24.21 ± 9.87
TS-118	CER	18.22 ± 10.61	TS-281	CER	27.04 ± 2.33	TS-606	BIG	19.65 ± 2.90
TS-120	CER	17.89 ± 2.94	TS-283	CER	20.78 ± 8.97	TS-609	BIG	11.97 ± 1.97
TS-122	BIG	21.99 ± 9.99	TS-286	CER	22.32 ± 3.65	TS-610	CER	16.79 ± 3.41
TS-126	BIG	27.32 ± 12.86	TS-288	BIG	20.15 ± 8.42	TS-611	BIG	20.58 ± 4.12
TS-129	CER	24.76 ± 1.62	TS-290	CER	26.86 ± 5.75	TS-612	BIG	19.94 ± 5.01
TS-131	CER	22.44 ± 1.85	TS-292	BIG	28.28 ± 3.03	TS-614	CER	37.42 ± 14.86
TS-132	BIG	36.02 ± 6.16	TS-293	BIG	27.51 ± 1.81	TS-615	CER	19.46 ± 1.31
TS-133	BIG	23.22 ± 4.56	TS-296	BIG	15.03 ± 4.55	TS-616	BIG	11.56 ± 1.44
TS-134	CER	25.39 ± 3.90	TS-297	BIG	16.59 ± 5.62	TS-617	BIG	25.78 ± 5.42
TS-136	BIG	13.79 ± 2.97	TS-298	CER	19.50 ± 5.67	TS-618	CER	19.78 ± 6.86
TS-137	BIG	15.02 ± 1.56	TS-300	CER	33.74 ± 7.59	TS-619	BIG	12.93 ± 0.40
TS-138	CER	22.25 ± 7.41	TS-301	CER	24.09 ± 2.37	TS-620	BIG	11.37 ± 2.66
TS-140	BIG	19.09 ± 1.61	TS-302	CER	18.79 ± 1.95	TS-621	BIG	25.26 ± 3.86
TS-141	BIG	26.40 ± 7.06	TS-303	CER	34.51 ± 3.13	TS-622	BIG	15.06 ± 4.53
TS-142	BIG	19.17 ± 5.75	TS-401	BIG	8.33 ± 1.12	TS-623	CER	8.62 ± 1.30
TS-143	BIG	17.71 ± 1.55	TS-411	PIM	38.47 ± 17.59	TS-624	BIG	11.51 ± 4.83
TS-147	BIG	26.61 ± 3.66	TS-413	PIM	18.62 ± 11.91	TS-625	BIG	16.41 ± 3.55
TS-150	BIG	27.34 ± 8.49	TS-419	PIM	26.05 ± 5.68	TS-626	BIG	17.82 ± 8.00
TS-151	BIG	16.05 ± 4.62	TS-420	PIM	30.59 ± 4.58	TS-627	BIG	9.53 ± 4.72
TS-152	BIG	14.95 ± 3.93	TS-450	CER	21.18 ± 4.47	TS-629	BIG	21.47 ± 5.60
TS-154	CER	26.50 ± 4.58	TS-501	BIG	23.82 ± 5.66	TS-630	BIG	11.70 ± 3.05
TS-155	BIG	16.66 ± 2.23	TS-502	BIG	22.70 ± 1.62	TS-631	BIG	11.76 ± 0.93
TS-156	PIM	15.09 ± 0.70	TS-504	BIG	18.22 ± 8.33	TS-632	BIG	24.57 ± 0.87
TS-157	BIG	20.11 ± 3.56	TS-505	BIG	24.57 ± 5.92	TS-633	BIG	15.86 ± 1.69
TS-158	CER	18.52 ± 0.82	TS-506	CER	26.37 ± 7.50	TS-635	BIG	18.45 ± 4.01
TS-160	BIG	26.63 ± 13.15	TS-507	BIG	21.67 ± 6.06	TS-636	BIG	8.90 ± 1.39
TS-161	BIG	38.15 ± 6.63	TS-508	CER	40.25 ± 16.54	TS-637	BIG	17.95 ± 4.17
TS-162	BIG	40.76 ± 8.94	TS-511	BIG	13.30 ± 5.12	TS-638	BIG	10.12 ± 3.98
TS-163	BIG	32.38 ± 9.76	TS-512	BIG	27.24 ± 1.36	TS-640	BIG	13.26 ± 1.87
TS-165	CER	21.32 ± 3.30	TS-513	BIG	15.28 ± 4.12	TS-641	BIG	12.06 ± 5.25
TS-166	BIG	57.42 ± 18.95	TS-514	BIG	16.48 ± 5.68	TS-642	BIG	22.83 ± 1.25
TS-167	BIG	45.51 ± 0.81	TS-515	BIG	20.86 ± 6.49	TS-643	BIG	20.04 ± 0.72
TS-168	BIG	21.99 ± 8.48	TS-517	BIG	21.01 ± 3.78	TS-644	BIG	19.87 ± 6.51
TS-169	BIG	18.52 ± 3.82	TS-518	BIG	10.73 ± 1.96	TS-645	BIG	35.72 ± 7.08
TS-171	BIG	26.70 ± 10.68	TS-519	BIG	14.00 ± 3.23	TS-646	BIG	15.49 ± 1.34
TS-172	BIG	20.08 ± 7.14	TS-520	BIG	38.28 ± 6.33	TS-647	BIG	13.86 ± 4.35
TS-175	BIG	17.92 ± 3.77	TS-521	BIG	28.18 ± 5.32	TS-648	BIG	19.53 ± 5.64
TS-176	BIG	20.85 ± 4.29	TS-522	BIG	27.86 ± 4.47	TS-649	BIG	14.91 ± 2.87
TS-177	BIG	14.79 ± 2.52	TS-523	BIG	49.55 ± 7.08	TS-650	BIG	13.10 ± 5.15
TS-180	BIG	27.36 ± 7.96	TS-524	BIG	41.95 ± 5.71	TS-652	CER	18.90 ± 9.23
TS-181	CER	30.77 ± 3.79	TS-525	BIG	25.44 ± 2.07	TS-653	BIG	14.59 ± 2.02
TS-182	PIM	34.30 ± 1.67	TS-526	CER	34.15 ± 9.74	TS-654	BIG	13.98 ± 1.79
TS-183	BIG	41.88 ± 8.46	TS-527	BIG	21.47 ± 3.54	TS-656	BIG	19.04 ± 3.32
TS-185	BIG	33.69 ± 11.2	TS-528	CER	16.18 ± 3.45	TS-657	CER	13.26 ± 3.90
TS-186	BIG	20.14 ± 4.72	TS-530	BIG	20.72 ± 3.06	TS-658	CER	29.87 ± 8.43
TS-187	CER	16.72 ± 3.09	TS-533	BIG	15.40 ± 1.70	TS-660	BIG	19.63 ± 3.53
TS-188	BIG	26.60 ± 1.67	TS-535	BIG	12.15 ± 2.23	TS-663	BIG	15.67 ± 0.16
TS-189	CER	23.32 ± 2.59	TS-536	CER	10.01 ± 0.24
TS-191	BIG	21.68 ± 4.07	TS-537	CER	9.73 ± 0.58

染色体 Chromosome	SNP位置/bp SNP position	基因型 Genotype	P值 P value	表型变异解释率/% PVE	SNP注释 SNP annotation
Chr02	39 074 212	-/G/K/T	1.17E-08	4.08	内含子区域 Intronic region
Chr02	39 134 548	-/A/G/R	2.09E-08	6.76	启动子区域 Prompter region
Chr05	41 598 797	-/G/K/T	7.15E-09	18.97	基因间 Intergenic region

染色体 Chromosome	SNP位置/bp SNP position	基因型 Genotype	P值 P value	表型变异解释率/% PVE	SNP注释 SNP annotation
Chr02	39 074 212	-/G/K/T	1.17E-08	4.08	内含子区域 Intronic region
Chr02	39 134 548	-/A/G/R	2.09E-08	6.76	启动子区域 Prompter region
Chr05	41 598 797	-/G/K/T	7.15E-09	18.97	基因间 Intergenic region

基因ID Gene ID	染色体上物理位置/bp Physical position on chromosome	编码蛋白 Coding protein
Solyc02g069020	Chr02：38971520-38974054	韧皮蛋白2 Phloem protein 2
Solyc02g069030	Chr02：38976036-38977596	韧皮蛋白2 Phloem protein 2
Solyc02g069040	Chr02：38978120-38979621	韧皮蛋白2 Phloem protein 2
Solyc02g069060	Chr02：39033490-39034511	韧皮凝集素Phloem lectin
Solyc02g069120	Chr02：39073779-39082069	锌指蛋白ZPR1 Zinc finger protein ZPR1
Solyc02g069150	Chr02：39096651-39102030	囊泡相关膜蛋白Vesicle-associated membrane protein
Solyc05g026480	Chr05：41470829-41477244	WD-40重复家族蛋白WD-40 repeat family protein

番茄抗旱性的全基因组关联分析

Genome-wide Association Studies of Drought Tolerance in Tomato

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番茄抗旱性的全基因组关联分析

Genome-wide Association Studies of Drought Tolerance in Tomato

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