园艺学报 ›› 2021, Vol. 48 ›› Issue (5): 987-1001.doi: 10.16420/j.issn.0513-353x.2020-0600
收稿日期:
2021-02-23
修回日期:
2021-03-19
出版日期:
2021-05-25
发布日期:
2021-06-07
作者简介:
* E-mail: 基金资助:
HU Jingtao*(), RUAN Yu, GAN Liping
Received:
2021-02-23
Revised:
2021-03-19
Online:
2021-05-25
Published:
2021-06-07
摘要:
以辣椒基因组数据为基础,利用生物信息学方法,对辣椒B-box家族基因进行了染色体定位、基因结构、系统进化及组织表达模式等分析,并通过qRT-PCR方法对该家族基因在激素及非生物胁迫下的转录水平进行了检测。辣椒全基因组中共鉴定出26个BBX家族成员,分布于辣椒12条染色体上。系统进化分析分析发现,辣椒BBX蛋白成员可进一步分为5类:groupⅠ~Ⅴ。其中,groupⅠ包含两个B-box结构域;group Ⅱ和Ⅲ中的蛋白除CaBBX25外,都包含B-box1、B-box2和CCT结构域;group Ⅳ仅包含1个B-box结构域;groupⅤ含有1个B-box和1个CCT结构域。同一进化分类中的成员通常具有相同或者相似的外显子数,其蛋白中保守基序的构成也具有较高的相似性。组织特异性表达分析发现,除D类基因外,其他17个基因在不同器官或者果实的不同发育时期都有着较高的表达水平。qRT-PCR分析发现,10个CaBBX基因受到激素和非生物胁迫不同程度的诱导表达。
中图分类号:
胡景涛, 阮宇, 甘丽萍. 辣椒B-box转录因子家族的鉴定及表达分析[J]. 园艺学报, 2021, 48(5): 987-1001.
HU Jingtao, RUAN Yu, GAN Liping. Identification and Expression Analysis of the B-box Transcription Factor Family in Pepper[J]. Acta Horticulturae Sinica, 2021, 48(5): 987-1001.
基因 Gene | 引物序列(5′-3′) Primer sequence | 产物大小/bp Product length | |
---|---|---|---|
CaBBX1 | F:TTGGGGATTTTGCTCCTACTAAG; | R:GCCTTAGATGTTCCATTGTCCA | 142 |
CaBBX2 | F:AAAGTCGCCTCCCATTCAGA; | R:GCAAAATCCCCAGTCTCGC | 132 |
CaBBX3 | F:TGGCAAGTAAGCATCAGAGGC; | R:TAGGAATCGCTGGTGGTTCTTAG | 182 |
CaBBX4 | F:CTCCACCTCCTCAGAAGAATCAG; | R:GAAGGAAATGGAAGATGGGCTA | 170 |
CaBBX5 | F:ATCTGTCAGGAAAGGAGGGCT; | R:AAGGTATCTGTTGTGCTTCTGAGTG | 120 |
CaBBX6 | F:TTTTCTGCTGGATGTAAACCTTTT; | R:TACCTCAATACTCTTGCTTCCCTG | 206 |
CaBBX7 | F:CTTGTGAGCAGGGGATGGG; | R:CAAAGGGGCAGACTTGACTAAAT | 149 |
CaBBX8 | F:AGACAGAGAAGCAAGAGTTTTACGA; | R:GTGCCCGATAAAATCTCCGT | 211 |
CaBBX9 | F:AATCTCACAATGCTCCCACTACTG; | R:CGAGCCTTCCTTGACTCATACC | 163 |
CaBBX10 | F:TCCATTACTGCCTCTGCTCGT; | R:ACATTTCCCTGCCAATCACTACT | 185 |
CaUBI3 | F:CTGGAGGTGTATTTTTGGTTTCA; | R:CAACAGAGAGCAGATGGACAGC | 215 |
表1 辣椒BBX基因qRT-PCR分析引物
Table 1 Primers used in qRT-PCR analysis of BBX genes in pepper
基因 Gene | 引物序列(5′-3′) Primer sequence | 产物大小/bp Product length | |
---|---|---|---|
CaBBX1 | F:TTGGGGATTTTGCTCCTACTAAG; | R:GCCTTAGATGTTCCATTGTCCA | 142 |
CaBBX2 | F:AAAGTCGCCTCCCATTCAGA; | R:GCAAAATCCCCAGTCTCGC | 132 |
CaBBX3 | F:TGGCAAGTAAGCATCAGAGGC; | R:TAGGAATCGCTGGTGGTTCTTAG | 182 |
CaBBX4 | F:CTCCACCTCCTCAGAAGAATCAG; | R:GAAGGAAATGGAAGATGGGCTA | 170 |
CaBBX5 | F:ATCTGTCAGGAAAGGAGGGCT; | R:AAGGTATCTGTTGTGCTTCTGAGTG | 120 |
CaBBX6 | F:TTTTCTGCTGGATGTAAACCTTTT; | R:TACCTCAATACTCTTGCTTCCCTG | 206 |
CaBBX7 | F:CTTGTGAGCAGGGGATGGG; | R:CAAAGGGGCAGACTTGACTAAAT | 149 |
CaBBX8 | F:AGACAGAGAAGCAAGAGTTTTACGA; | R:GTGCCCGATAAAATCTCCGT | 211 |
CaBBX9 | F:AATCTCACAATGCTCCCACTACTG; | R:CGAGCCTTCCTTGACTCATACC | 163 |
CaBBX10 | F:TCCATTACTGCCTCTGCTCGT; | R:ACATTTCCCTGCCAATCACTACT | 185 |
CaUBI3 | F:CTGGAGGTGTATTTTTGGTTTCA; | R:CAACAGAGAGCAGATGGACAGC | 215 |
名称 Name | 蛋白/aa Proten length | 分子量 Molecular weight | 等电点 PI | 不稳定指数 Instability index | 脂肪系数 Aliphatic index | 亲水性值 Hydropathicity |
---|---|---|---|---|---|---|
CaBBX1 | 297 | 32 012.77 | 4.98 | 54.36 | 66.70 | -0.377 |
CaBBX2 | 299 | 32 173.20 | 4.97 | 52.19 | 71.51 | -0.269 |
CaBBX3 | 233 | 25 979.56 | 5.00 | 52.79 | 78.37 | -0.415 |
CaBBX4 | 305 | 33 860.88 | 6.24 | 54.56 | 68.39 | -0.443 |
CaBBX5 | 319 | 35 220.55 | 6.50 | 55.21 | 70.25 | -0.497 |
CaBBX6 | 343 | 37 932.28 | 5.45 | 51.27 | 65.98 | -0.493 |
CaBBX7 | 414 | 45 344.37 | 5.48 | 56.84 | 58.41 | -0.535 |
CaBBX8 | 384 | 42 540.99 | 6.56 | 40.78 | 72.86 | -0.345 |
CaBBX9 | 387 | 43 342.99 | 5.45 | 55.93 | 57.18 | -0.755 |
CaBBX10 | 469 | 51 670.91 | 6.75 | 48.26 | 66.59 | -0.637 |
CaBBX11 | 267 | 29 831.52 | 5.62 | 46.30 | 78.91 | -0.431 |
CaBBX12 | 212 | 23 515.68 | 6.17 | 56.08 | 71.79 | -0.559 |
CaBBX13 | 356 | 39 425.86 | 5.29 | 45.15 | 64.66 | -0.499 |
CaBBX14 | 404 | 44 556.35 | 5.41 | 39.93 | 63.76 | -0.634 |
CaBBX15 | 407 | 45 394.43 | 5.32 | 44.63 | 67.59 | -0.636 |
CaBBX16 | 398 | 43 889.44 | 5.27 | 41.34 | 62.04 | -0.637 |
CaBBX17 | 426 | 46 866.13 | 5.07 | 52.81 | 60.68 | -0.593 |
CaBBX18 | 409 | 45 276.46 | 5.27 | 61.89 | 57.48 | -0.595 |
CaBBX19 | 411 | 46 715.66 | 5.26 | 50.78 | 61.29 | -0.856 |
CaBBX20 | 171 | 18 935.07 | 4.39 | 51.21 | 48.42 | -0.932 |
CaBBX21 | 470 | 53 535.89 | 5.21 | 41.38 | 69.49 | -0.713 |
CaBBX22 | 247 | 27 399.14 | 4.60 | 53.57 | 57.29 | -0.745 |
CaBBX23 | 201 | 22 041.04 | 4.49 | 57.37 | 58.21 | -0.705 |
CaBBX24 | 247 | 27 712.80 | 9.17 | 63.21 | 76.64 | -0.279 |
CaBBX25 | 491 | 54 983.39 | 6.00 | 57.73 | 68.15 | -0.665 |
CaBBX26 | 182 | 20 146.89 | 6.78 | 44.30 | 66.98 | -0.554 |
名称 Name | 基因登录号 Gene locus ID | 亚细胞定位 Subcellular localization | ||||
CaBBX1 | XM_016725607.1/Capana07g002062 | nucl:13,cyto:1 | ||||
CaBBX2 | XM_016685612.1/Capana09g000394 | nucl:11,chlo:1,cyto:1,extr:1 | ||||
CaBBX3 | XM_016722599.1/Capana06g000735 | nucl:7,cyto:2,plas:2,cysk:2,chlo:1 | ||||
CaBBX4 | XM_016715935.1/Capana04g000266 | nucl:8,cyto:3,chlo:2,extr:1 | ||||
CaBBX5 | XM_016696615.1/Capana12g000659 | nucl:11,chlo:1,cyto:1,extr:1 | ||||
CaBBX6 | XM_016693601.1/Capana01g004030 | chlo:13,nucl:1 | ||||
CaBBX7 | XM_016724939.1/Capana07g001114 | nucl:14 | ||||
CaBBX8 | XM_016724136.1/Capana07g000030 | cyto:5,nucl:3,chlo:2,extr:2,cysk:2 | ||||
CaBBX9 | XM_016710217.1/Capana03g003558 | nucl:11,chlo:1,plas:1,vacu:1 | ||||
CaBBX10 | XM_016699689.1/Capana00g001486 | nucl:14 | ||||
CaBBX11 | XM_016684335.1/Capana08g002611 | nucl:7,cyto:3,chlo:2,extr:1,vacu:1 | ||||
CaBBX12 | XM_016684347.1/Capana08g002625 | cyto:5,chlo:3,nucl:3,cysk_plas:2,plas:1.5,cysk:1.5 | ||||
CaBBX13 | XM_016696444.1/Capana12g000414 | chlo:11,nucl:2,cyto:1 | ||||
CaBBX14 | XM_016705720.1/Capana02g003199 | nucl:9,chlo:5 | ||||
CaBBX15 | XM_016705721.1/Capana02g003201 | chlo:7,nucl:6,cyto:1 | ||||
CaBBX16 | XM_016705722.1/Capana02g003200 | nucl:13,plas:1 | ||||
CaBBX17 | XM_016697126.1/Capana00g004489 | nucl:13,mito:1 | ||||
CaBBX18 | XM_016699024.1/Capana00g004028 | nucl:14 | ||||
CaBBX19 | XM_016707287.1/Capana03g000377 | nucl:10,chlo:2,mito:1,cysk:1 | ||||
CaBBX20 | XM_016706590.1/CA02g17080 | nucl:8,chlo:3,cyto:1,mito:1,plas:1 | ||||
CaBBX21 | XM_016693241.1/Capana11g002294 | chlo:4,nucl:4,cyto:2,mito:2,plas:1,cysk:1 | ||||
CaBBX22 | XM_016725230.1/Capana07g001588 | chlo:9,mito:3,nucl:2 | ||||
CaBBX23 | XM_016690415.1/Capana10g000048 | nucl:13,mito:1 | ||||
CaBBX24 | XM_016700813.1/Capana00g004911 | nucl:8,cyto:4,extr:2 | ||||
CaBBX25 | XM_016717318.1/Capana05g001195 | nucl:13,mito:1 | ||||
CaBBX26 | XM_016705057.1/Capana02g002620 | cyto:12,plas:1,cysk:1 |
表2 辣椒BBX家族蛋白基本信息
Table 2 The detailed information of CaBBX members
名称 Name | 蛋白/aa Proten length | 分子量 Molecular weight | 等电点 PI | 不稳定指数 Instability index | 脂肪系数 Aliphatic index | 亲水性值 Hydropathicity |
---|---|---|---|---|---|---|
CaBBX1 | 297 | 32 012.77 | 4.98 | 54.36 | 66.70 | -0.377 |
CaBBX2 | 299 | 32 173.20 | 4.97 | 52.19 | 71.51 | -0.269 |
CaBBX3 | 233 | 25 979.56 | 5.00 | 52.79 | 78.37 | -0.415 |
CaBBX4 | 305 | 33 860.88 | 6.24 | 54.56 | 68.39 | -0.443 |
CaBBX5 | 319 | 35 220.55 | 6.50 | 55.21 | 70.25 | -0.497 |
CaBBX6 | 343 | 37 932.28 | 5.45 | 51.27 | 65.98 | -0.493 |
CaBBX7 | 414 | 45 344.37 | 5.48 | 56.84 | 58.41 | -0.535 |
CaBBX8 | 384 | 42 540.99 | 6.56 | 40.78 | 72.86 | -0.345 |
CaBBX9 | 387 | 43 342.99 | 5.45 | 55.93 | 57.18 | -0.755 |
CaBBX10 | 469 | 51 670.91 | 6.75 | 48.26 | 66.59 | -0.637 |
CaBBX11 | 267 | 29 831.52 | 5.62 | 46.30 | 78.91 | -0.431 |
CaBBX12 | 212 | 23 515.68 | 6.17 | 56.08 | 71.79 | -0.559 |
CaBBX13 | 356 | 39 425.86 | 5.29 | 45.15 | 64.66 | -0.499 |
CaBBX14 | 404 | 44 556.35 | 5.41 | 39.93 | 63.76 | -0.634 |
CaBBX15 | 407 | 45 394.43 | 5.32 | 44.63 | 67.59 | -0.636 |
CaBBX16 | 398 | 43 889.44 | 5.27 | 41.34 | 62.04 | -0.637 |
CaBBX17 | 426 | 46 866.13 | 5.07 | 52.81 | 60.68 | -0.593 |
CaBBX18 | 409 | 45 276.46 | 5.27 | 61.89 | 57.48 | -0.595 |
CaBBX19 | 411 | 46 715.66 | 5.26 | 50.78 | 61.29 | -0.856 |
CaBBX20 | 171 | 18 935.07 | 4.39 | 51.21 | 48.42 | -0.932 |
CaBBX21 | 470 | 53 535.89 | 5.21 | 41.38 | 69.49 | -0.713 |
CaBBX22 | 247 | 27 399.14 | 4.60 | 53.57 | 57.29 | -0.745 |
CaBBX23 | 201 | 22 041.04 | 4.49 | 57.37 | 58.21 | -0.705 |
CaBBX24 | 247 | 27 712.80 | 9.17 | 63.21 | 76.64 | -0.279 |
CaBBX25 | 491 | 54 983.39 | 6.00 | 57.73 | 68.15 | -0.665 |
CaBBX26 | 182 | 20 146.89 | 6.78 | 44.30 | 66.98 | -0.554 |
名称 Name | 基因登录号 Gene locus ID | 亚细胞定位 Subcellular localization | ||||
CaBBX1 | XM_016725607.1/Capana07g002062 | nucl:13,cyto:1 | ||||
CaBBX2 | XM_016685612.1/Capana09g000394 | nucl:11,chlo:1,cyto:1,extr:1 | ||||
CaBBX3 | XM_016722599.1/Capana06g000735 | nucl:7,cyto:2,plas:2,cysk:2,chlo:1 | ||||
CaBBX4 | XM_016715935.1/Capana04g000266 | nucl:8,cyto:3,chlo:2,extr:1 | ||||
CaBBX5 | XM_016696615.1/Capana12g000659 | nucl:11,chlo:1,cyto:1,extr:1 | ||||
CaBBX6 | XM_016693601.1/Capana01g004030 | chlo:13,nucl:1 | ||||
CaBBX7 | XM_016724939.1/Capana07g001114 | nucl:14 | ||||
CaBBX8 | XM_016724136.1/Capana07g000030 | cyto:5,nucl:3,chlo:2,extr:2,cysk:2 | ||||
CaBBX9 | XM_016710217.1/Capana03g003558 | nucl:11,chlo:1,plas:1,vacu:1 | ||||
CaBBX10 | XM_016699689.1/Capana00g001486 | nucl:14 | ||||
CaBBX11 | XM_016684335.1/Capana08g002611 | nucl:7,cyto:3,chlo:2,extr:1,vacu:1 | ||||
CaBBX12 | XM_016684347.1/Capana08g002625 | cyto:5,chlo:3,nucl:3,cysk_plas:2,plas:1.5,cysk:1.5 | ||||
CaBBX13 | XM_016696444.1/Capana12g000414 | chlo:11,nucl:2,cyto:1 | ||||
CaBBX14 | XM_016705720.1/Capana02g003199 | nucl:9,chlo:5 | ||||
CaBBX15 | XM_016705721.1/Capana02g003201 | chlo:7,nucl:6,cyto:1 | ||||
CaBBX16 | XM_016705722.1/Capana02g003200 | nucl:13,plas:1 | ||||
CaBBX17 | XM_016697126.1/Capana00g004489 | nucl:13,mito:1 | ||||
CaBBX18 | XM_016699024.1/Capana00g004028 | nucl:14 | ||||
CaBBX19 | XM_016707287.1/Capana03g000377 | nucl:10,chlo:2,mito:1,cysk:1 | ||||
CaBBX20 | XM_016706590.1/CA02g17080 | nucl:8,chlo:3,cyto:1,mito:1,plas:1 | ||||
CaBBX21 | XM_016693241.1/Capana11g002294 | chlo:4,nucl:4,cyto:2,mito:2,plas:1,cysk:1 | ||||
CaBBX22 | XM_016725230.1/Capana07g001588 | chlo:9,mito:3,nucl:2 | ||||
CaBBX23 | XM_016690415.1/Capana10g000048 | nucl:13,mito:1 | ||||
CaBBX24 | XM_016700813.1/Capana00g004911 | nucl:8,cyto:4,extr:2 | ||||
CaBBX25 | XM_016717318.1/Capana05g001195 | nucl:13,mito:1 | ||||
CaBBX26 | XM_016705057.1/Capana02g002620 | cyto:12,plas:1,cysk:1 |
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