Acta Horticulturae Sinica ›› 2022, Vol. 49 ›› Issue (3): 613-621.doi: 10.16420/j.issn.0513-353x.2021-0018
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QIAO Jun, LIU Jing, LI Suwen, WANG Liying*()
Received:
2021-08-02
Revised:
2021-11-25
Online:
2022-03-25
Published:
2022-03-25
Contact:
WANG Liying
E-mail:sun_hwg@163.com
CLC Number:
QIAO Jun, LIU Jing, LI Suwen, WANG Liying. Prediction of Fruit Color Genes Under the Calyx of Eggplant Based on Genome-wide Resequencing in an Extreme Mixing Pool[J]. Acta Horticulturae Sinica, 2022, 49(3): 613-621.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2021-0018
预测基因 Predicted gene | 染色体 Chr. | 关联区间/Mb Correlation interval | 突变位置 Mutation location | 突变碱基 Mutant base | 突变区域 Mutation region | 是否同义突变 Synonymous mutation(Y/N) | 基因注释 Gene annotation |
---|---|---|---|---|---|---|---|
EGP21397 | 10 | 1.9 ~ 5.1 | 2 045 972 | G→A | 外显子区 Extron | 否N | C2H2型锌指蛋白 C2HC zinc fingers superfamily protein |
EGP21400 | 10 | 1.9 ~ 5.1 | 2 112 411 | A→T | 外显子区 Extron | 否N | 钙调素结合家族蛋白 Calmodulin-binding family protein |
EGP21491 | 10 | 1.9 ~ 5.1 | 3 244 885 | T→C | 外显子区 Extron | 否N | 类胡萝卜素异构酶 Carotenoid isomerase |
EGP21416 | 10 | 1.9 ~ 5.1 | 2 279 620 | A→G | 基因间 Intergenic | 否N | 细胞色素P450,家族96,亚家族A,多肽1 Cytochrome P450,family 96,subfamily A,polypeptide 1 |
EGP21417 | 10 | 1.9 ~ 5.1 | 2 279 620 | A→G | 基因间 Intergenic | 否N | 细胞色素P450,家族96,亚家族A,多肽1 Cytochrome P450,family 96,subfamily A,polypeptide 1 |
EGP21480 | 10 | 1.9 ~ 5.1 | 3 107 257 | G→A | 基因间 Intergenic | 否N | 细胞色素P450,家族82,亚家族C,多肽4 Cytochrome P450,family 82,subfamily C,polypeptide 4 |
EGP21561 | 10 | 1.9 ~ 5.1 | 3 901 677 | G→A | 基因间 Intergenic | 否N | 细胞色素P450,家族94,亚家族C,多肽1 Cytochrome P450,family 94,subfamily C, polypeptide 1 |
EGP21596 | 10 | 1.9 ~ 5.1 | 4 258 708 | C→A | 基因间 Intergenic | 否N | 细胞色素P450,家族76,亚家族C,多肽7 Cytochrome P450,family 76,subfamily C, polypeptide 7 |
EGP21891 | 10 | 7.3 ~ 14.1 | 8 710 042 | G→A | 基因间 Intergenic | 否N | 光敏色素 Phytochrome |
EGP22288 | 10 | 14.5 ~ 23.7 | 17 833 364 | A→G | 基因间 Intergenic | 否N | 2Fe-2S铁氧还蛋白样超家族蛋白 2Fe-2S ferredoxin-like superfamily protein |
EGP22289 | 10 | 14.5 ~ 23.7 | 17 833 364 | A→G | 基因间 Intergenic | 否N | 脂质转运蛋白 Lipid transfer protein |
Table 1 Predicted gene loci and annotation information
预测基因 Predicted gene | 染色体 Chr. | 关联区间/Mb Correlation interval | 突变位置 Mutation location | 突变碱基 Mutant base | 突变区域 Mutation region | 是否同义突变 Synonymous mutation(Y/N) | 基因注释 Gene annotation |
---|---|---|---|---|---|---|---|
EGP21397 | 10 | 1.9 ~ 5.1 | 2 045 972 | G→A | 外显子区 Extron | 否N | C2H2型锌指蛋白 C2HC zinc fingers superfamily protein |
EGP21400 | 10 | 1.9 ~ 5.1 | 2 112 411 | A→T | 外显子区 Extron | 否N | 钙调素结合家族蛋白 Calmodulin-binding family protein |
EGP21491 | 10 | 1.9 ~ 5.1 | 3 244 885 | T→C | 外显子区 Extron | 否N | 类胡萝卜素异构酶 Carotenoid isomerase |
EGP21416 | 10 | 1.9 ~ 5.1 | 2 279 620 | A→G | 基因间 Intergenic | 否N | 细胞色素P450,家族96,亚家族A,多肽1 Cytochrome P450,family 96,subfamily A,polypeptide 1 |
EGP21417 | 10 | 1.9 ~ 5.1 | 2 279 620 | A→G | 基因间 Intergenic | 否N | 细胞色素P450,家族96,亚家族A,多肽1 Cytochrome P450,family 96,subfamily A,polypeptide 1 |
EGP21480 | 10 | 1.9 ~ 5.1 | 3 107 257 | G→A | 基因间 Intergenic | 否N | 细胞色素P450,家族82,亚家族C,多肽4 Cytochrome P450,family 82,subfamily C,polypeptide 4 |
EGP21561 | 10 | 1.9 ~ 5.1 | 3 901 677 | G→A | 基因间 Intergenic | 否N | 细胞色素P450,家族94,亚家族C,多肽1 Cytochrome P450,family 94,subfamily C, polypeptide 1 |
EGP21596 | 10 | 1.9 ~ 5.1 | 4 258 708 | C→A | 基因间 Intergenic | 否N | 细胞色素P450,家族76,亚家族C,多肽7 Cytochrome P450,family 76,subfamily C, polypeptide 7 |
EGP21891 | 10 | 7.3 ~ 14.1 | 8 710 042 | G→A | 基因间 Intergenic | 否N | 光敏色素 Phytochrome |
EGP22288 | 10 | 14.5 ~ 23.7 | 17 833 364 | A→G | 基因间 Intergenic | 否N | 2Fe-2S铁氧还蛋白样超家族蛋白 2Fe-2S ferredoxin-like superfamily protein |
EGP22289 | 10 | 14.5 ~ 23.7 | 17 833 364 | A→G | 基因间 Intergenic | 否N | 脂质转运蛋白 Lipid transfer protein |
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