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园艺学报 ›› 2019, Vol. 46 ›› Issue (12): 2369-2382.doi: 10.16420/j.issn.0513-353x.2019-0320

• 研究论文 • 上一篇    下一篇

茶树TCP转录因子的鉴定与表达分析

温贝贝1,罗 勇1,刘冬敏1,张向娜1,李 娟1,2,3,王英姿1,2,3,王坤波1,2,3,*,黄建安1,2,3,*   

  1. 1湖南农业大学茶学教育部重点实验室,长沙 410128;2国家植物功能成分利用工程技术研究中心,长沙 410128;3湖南省植物功能成分利用协同创新中心,长沙 410128
  • 出版日期:2019-12-25 发布日期:2019-12-25
  • 基金资助:
    国家自然科学基金项目(31670691,31500567,31470692)

Identification and Expression Profiling Analysis of TCP Family Genes Involved in Growth and Development in Camellia sinensis

WEN Beibei1,LUO Yong1,LIU Dongmin1,ZHANG Xiangna1,LI Juan1,2,3,WANG Yingzi1,2,3,WANG Kunbo1,2,3,*,and HUANG Jian’an1,2,3,*   

  1. 1Key Laboratory of Ministry of Education for Tea Science,Hunan Agricultural University,Changsha 410128,China;2National Research Center of Engineering Technology for Utilization of Botanical Functional Ingredients,Changsha 410128,China;3Hunan Collaborative Innovation Center of Utilization of Functional Ingredients from Botanicals,Changsha 410128,China
  • Online:2019-12-25 Published:2019-12-25

摘要: 基于茶树基因组数据,通过生物信息学方法,对茶树全基因组TCP家族成员进行染色体定位、基因结构、编码蛋白特性和系统进化关系分析,同时采用荧光定量PCR验证茶树TCPs在不同组织部位的相对表达水平。结果表明,茶树全基因组中共鉴定出36个具有典型TCP保守结构域的转录因子基因,其CDS全长和编码氨基酸的数量分别在453 ~ 1 824 bp和150 ~ 607 aa之间,命名为CsTCP1 ~ CsTCP30。系统进化分析显示,茶树TCP转录因子家族可分为2个亚族:Class I和Class II,并可进一步分为8个亚组(A ~ H),其中Class I亚族中的TCP蛋白属于PCF或TCP-P类型,而Class II可分为CYC/TB1和CIN两种类型。基因结构和保守结构域分析结果显示,同一亚组内,TCP蛋白具有相似的氨基酸结构和保守区域,而不同亚组之间具有较大差异,暗示不同类型TCP转录因子可能具有独特的生理功能。除CsTCP21b外,其余35个CsTCP基因在茶树叶片不同生长时期均有表达,但其表达水平呈现不同趋势;荧光定量分析显示其家族成员具有组织表达特异性;外源GA3和ABA处理可以显著激活或抑制该家族基因成员的表达。

关键词: 茶树, TCP转录因子, 全基因组, 系统进化分析, 定量表达

Abstract: In this study,a genome-wide analysis of TCP genes was performed in Camellia sinensis,including identification,chromosomal localization,gene structure,phylogenetic analyses and expression analysis in different organs. In all,thirty-six proteins were identified with typical TCP domains. The length of CDS is from 453 to 1 824 bp,and proteins’ length is from 150 to 607 aa(amino acids).These identified CsTCP members were named as CsTCP1–CsTCP30. Phylogenetic and comprehensive bioinformatics analyses of these genes revealed that Camellia sinensis TCP family proteins could be classified into two classes(ClassⅠand ClassⅡ),which could be further divided into eight subgroups(A–H). Among them,ClassⅠ are also known as PCF or TCP-P,and ClassⅡcan be clustered into CYC/TB1 and CIN types. Gene structures and conserved motif analysis of CsTCPs indicated that different types of TCP genes had undergone different evolutionary processes and the genes in the same clade had similar chromosomal location,gene structure,and conserved domains. Except for CsTCP21b the expression of all 35 CsTCP genes could be detected in tea leaves of different growth stages,and qRT-PCR experiments results revealed that the CsTCPs gene family exhibited distinct expression pattern in different tissues. GA3 and ABA treatments could promote or repress the expression of CsTCPs,significantly.

Key words: Camellia sinensis, TCP transcription factor, whole genome;phylogenetic analysis, qRT-PCR expression

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