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园艺学报 ›› 2026, Vol. 53 ›› Issue (8): 2224-2240.doi: 10.16420/j.issn.0513-353x.2025-0698

• 遗传育种 · 种质资源 · 分子生物学 • 上一篇    下一篇

基于SSR分子标记的新疆桃地方品种遗传多样性分析及DNA指纹图谱的构建

买尔哈巴·塞来江1,2,*, 程平3,*, 米尔阿迪力·麦木提敏4, 李丹3, 艾沙江·阿不都沙拉木1,2,**()   

  1. 1 喀什大学生命与地理科学学院, 新疆喀什 844006
    2 新疆帕米尔高原生物资源与生态重点实验室, 新疆喀什 844006
    3 新疆农业大学林学与风景园林学院, 乌鲁木齐 830052
    4 喀什地区科技局, 新疆喀什 844006
  • 收稿日期:2025-12-17 修回日期:2026-07-09 出版日期:2026-08-25 发布日期:2026-08-25
  • 通讯作者:
    ** E-mail:
  • 作者简介:

    共同第一作者

  • 基金资助:
    新疆维吾尔自治区重大科技专项(2023A02008-4); 喀什大学校级科研项目[(2024)

Genetic Diversity Analysis and DNA Fingerprinting Development of Prunus ferganensis Landrace Germplasm Based on SSR

SAILAIJIANG Maierhaba1,2, CHENG Ping3, MAIMUTIMIN Mieradili4, LI Dan3, ABDUSALAM Aysajan1,2,**()   

  1. 1 College of Life and Geographic SciencesKashi University,Kashi, Xinjiang 844006, China
    2 Key Laboratory of Biological Resources and Ecology of Pamirs Plateau in XinjiangKashi, Xinjiang 844006, China
    3 College of Forestry and Landscape ArchitectureXinjiang Agricultural University, Urumqi 830052, China
    4 Kashgar Prefectural Science and Technology BureauKashi, Xinjiang 844006, China
  • Received:2025-12-17 Revised:2026-07-09 Published:2026-08-25 Online:2026-08-25

摘要:

目前对新疆桃地方种质资源的系统性遗传评价仍较为缺乏。选取153份新疆桃地方种质作为研究对象,利用16对SSR引物开展多维度分析(遗传多样性、聚类分析及群体结构分析),系统解析其遗传变异规律。同时,基于毛细管电泳分型技术,成功构建了新疆桃地方品种DNA指纹图谱。主要结果如下:(1)16对SSR引物在153份桃种质中共扩增出121个多态性位点;有效等位基因数(Ne)范围为1.10 ~ 4.70;香农信息指数(I)范围为0.23 ~ 1.78;观测杂合度(Ho)为0.05 ~ 0.26;期望杂合度(He)为0.09 ~ 0.79;多态信息含量(PIC)为0.09 ~ 0.76(均值0.50)。(2)UPGMA聚类分析将153份种质资源分为9个类群,平均遗传距离为0.50;聚类结果与品种地理来源及桃类型无明显相关性。(3)基于STRUCTURE群体遗传结构分析表明,153份种质可分为3个亚群,推测其可能分别对应野生型、地方品种及栽培品种三大遗传背景。(4)采用覆盖桃基因组8条染色体的SSR核心引物组合,成功构建128份新疆桃地方种质资源的分子身份识别编码体系,为核心种质库的标准化构建及优异基因挖掘奠定了分子鉴定基础。

关键词: 桃, 新疆桃, 种质, SSR标记, 遗传多样性, 指纹图谱

Abstract:

Currently,systematic genetic evaluation of Xinjiang peach landrace germplasm remains limited. A total of 153 Xinjiang peach landrace accessions were selected and analyzed using 16 SSR primers for multi-dimensional analyses(genetic diversity,cluster analysis,and population structure analysis)to systematically unravel their genetic variation patterns. Meanwhile,a DNA fingerprint database for Xinjiang peach landrace varieties was successfully constructed based on capillary electrophoresis. The main results are as follows:(1) The 16 SSR primer pairs amplified 121 polymorphic loci across the 153 peach accessions;the effective number of alleles(Ne)ranged from 1.10 to 4.70,Shannon’s information index(I)from 0.23 to 1.78,observed heterozygosity(Ho)from 0.05 to 0.26,expected heterozygosity (He)from 0.09 to 0.79,and polymorphism information content(PIC)from 0.09 to 0.76(mean 0.50). (2) UPGMA cluster analysis divided the 153 accessions into 9 groups with an average genetic distance of 0.50;the clustering showed no significant correlation with geographical origin or peach type. (3) STRUCTURE-based population genetic structure analysis indicated that the 153 accessions could be partitioned into three subpopulations,which were speculated to correspond to wild types,landraces,and cultivated cultivars. (4) Using a core set of SSR primers covering the eight chromosomes of the peach genome,molecular identification codes were successfully established for 128 Xinjiang peach landrace accessions,providing a molecular basis for the standardized construction of core germplasm collections and the mining of elite genes.

Key words: Prunus persica, Prunus ferganensis, germplasm, SSR markers, genetic diversity, DNA fingerprinting