Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (3): 545-559.doi: 10.16420/j.issn.0513-353x.2023-0098
• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles
LIU Jinhong, WANG Zheng, YU Hao, XIN Yirui, QI Guoning, LIU Shenkui, REN Huimin*()
Received:
2023-04-16
Revised:
2023-11-17
Online:
2024-03-25
Published:
2024-03-22
Contact:
REN Huimin
LIU Jinhong, WANG Zheng, YU Hao, XIN Yirui, QI Guoning, LIU Shenkui, REN Huimin. Identification of SLAC Gene Family in Phyllostachys edulis and Characterization of PheSLAC1[J]. Acta Horticulturae Sinica, 2024, 51(3): 545-559.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2023-0098
引物用途 Primer use | 引物名称 Primer name | 引物序列(5′-3′) Primer sequence | |
---|---|---|---|
实时荧光定量引物 qRT-PCR primer | NTB | F:TCTTGTTTGACACCGAAGAGGAG; | R:AATAGCTGTCCCTGGAGGAGTTT |
PheSLAC1.1 | F:FTTCTTCATGGCGCTCTTCTT; | R:GACATGAGGGAGAGGCTCAG | |
PheSLAC1.2 | F:GCGCGGACATTATTCTTCAT; | R:GACATGAGGGAGAGGCTCAG | |
PH02Gene35134 | F:ATCTACGGCCAGTGGTTCAC; | R:TGACGAACAGCACGAGGTAG | |
PH02Gene08796 | F:CATGAACTACCTCTTCGCGC; | R:GAACCACTGGCCGTAGATCT | |
PH02Gene45054 | F:ACTACAGCGTGCTGTTCGTG; | R:GAACCCACGGAAGAAGTTGA | |
PH02Gene22907 | F:TGTTCGTGACGCTCTACCAG; | R:TGAACCCCCTGAAAAAGTTG | |
PH02Gene22131 | F:CCAGAGTCCAACGCTTCTTC; | R:ATCTTGAGCGTGATGTGCAG | |
PH02Gene10869 | F:AGCTAAGGTCGGAGGAGGAG; | R:ATCTTGAGCGTGATGTGCAG | |
PH02Gene20948 | F:ATCTACGGGCAGTGGATGTC; | R:TGGTACAGCGTGACGAAGAG | |
PH02Gene48421 | F:GCCTCCCTGAATGAGCATAA; | R:ATGCTGAGCGAAAGGGAGTA | |
PH02Gene25481 | F:GTGGATGAACAGGGGAAAGA; | R:GGACCTCGAGTTTTGTCTCG | |
PH02Gene41494 | F:GGAAGGACGTCGTGATTAGC; | R:GGACCTCGAGTTTTGTCTCG | |
PH02Gene06334 | F:CTGTCCGCCGAGAGTTTTAC; | R:GAGCTCAAGGCAGAAGATGG | |
PH02Gene06335 | F:GGCTTCGTCTCGGTGATCTA; | R:CATCCACTGCCCGTAGATCT | |
PH02Gene20553 | F:ATCTACGGGCAGTGGATGTC; | R:TGACGAACAGCACGAGGTAG | |
AtACTIN2 | F:GGTAACATTGTGCTCAGTGGTGG; | R:AACGACCTTAATCTTCATGCTGC | |
转基因和亚细胞定位 Transgene and subcellular localization | PheSLAC1.1-1304 | F: GAAGATCTTATGGCAGCCGAGCCATCGTC R: CGGACTAGTGTCTGTTTTCTCCTCTTCGTCCTT | |
PheSLAC1.2-1304 | F: GAAGATCTTATGGCAGCCGAGCCATCGTC R: CGGACTAGTTTCTGTTTCCTCCTCTTCATCCTTG | ||
PheSLAC1.1-GFP | F: TCCCCCCGGGATGGCAGCCGAGCCATCGTCT R: CTAGTCTAGAGTCTGTTTTCTCCTCTTCGTCCTT | ||
PheSLAC1.2-GFP | F: TCCCCCCGGGATGGCAGCCGAGCCATCGTC R: CTAGTCT AGATTCTGTTTCCTCCTCTTCATCCT |
Table 1 Primers used in this study
引物用途 Primer use | 引物名称 Primer name | 引物序列(5′-3′) Primer sequence | |
---|---|---|---|
实时荧光定量引物 qRT-PCR primer | NTB | F:TCTTGTTTGACACCGAAGAGGAG; | R:AATAGCTGTCCCTGGAGGAGTTT |
PheSLAC1.1 | F:FTTCTTCATGGCGCTCTTCTT; | R:GACATGAGGGAGAGGCTCAG | |
PheSLAC1.2 | F:GCGCGGACATTATTCTTCAT; | R:GACATGAGGGAGAGGCTCAG | |
PH02Gene35134 | F:ATCTACGGCCAGTGGTTCAC; | R:TGACGAACAGCACGAGGTAG | |
PH02Gene08796 | F:CATGAACTACCTCTTCGCGC; | R:GAACCACTGGCCGTAGATCT | |
PH02Gene45054 | F:ACTACAGCGTGCTGTTCGTG; | R:GAACCCACGGAAGAAGTTGA | |
PH02Gene22907 | F:TGTTCGTGACGCTCTACCAG; | R:TGAACCCCCTGAAAAAGTTG | |
PH02Gene22131 | F:CCAGAGTCCAACGCTTCTTC; | R:ATCTTGAGCGTGATGTGCAG | |
PH02Gene10869 | F:AGCTAAGGTCGGAGGAGGAG; | R:ATCTTGAGCGTGATGTGCAG | |
PH02Gene20948 | F:ATCTACGGGCAGTGGATGTC; | R:TGGTACAGCGTGACGAAGAG | |
PH02Gene48421 | F:GCCTCCCTGAATGAGCATAA; | R:ATGCTGAGCGAAAGGGAGTA | |
PH02Gene25481 | F:GTGGATGAACAGGGGAAAGA; | R:GGACCTCGAGTTTTGTCTCG | |
PH02Gene41494 | F:GGAAGGACGTCGTGATTAGC; | R:GGACCTCGAGTTTTGTCTCG | |
PH02Gene06334 | F:CTGTCCGCCGAGAGTTTTAC; | R:GAGCTCAAGGCAGAAGATGG | |
PH02Gene06335 | F:GGCTTCGTCTCGGTGATCTA; | R:CATCCACTGCCCGTAGATCT | |
PH02Gene20553 | F:ATCTACGGGCAGTGGATGTC; | R:TGACGAACAGCACGAGGTAG | |
AtACTIN2 | F:GGTAACATTGTGCTCAGTGGTGG; | R:AACGACCTTAATCTTCATGCTGC | |
转基因和亚细胞定位 Transgene and subcellular localization | PheSLAC1.1-1304 | F: GAAGATCTTATGGCAGCCGAGCCATCGTC R: CGGACTAGTGTCTGTTTTCTCCTCTTCGTCCTT | |
PheSLAC1.2-1304 | F: GAAGATCTTATGGCAGCCGAGCCATCGTC R: CGGACTAGTTTCTGTTTCCTCCTCTTCATCCTTG | ||
PheSLAC1.1-GFP | F: TCCCCCCGGGATGGCAGCCGAGCCATCGTCT R: CTAGTCTAGAGTCTGTTTTCTCCTCTTCGTCCTT | ||
PheSLAC1.2-GFP | F: TCCCCCCGGGATGGCAGCCGAGCCATCGTC R: CTAGTCT AGATTCTGTTTCCTCCTCTTCATCCT |
种类 Species | 蒸腾速率/(mmol · m-2 · s-1) Transpiration rate | 气孔导度/(mmol · m-2 · s-1) Stomatal conductance |
---|---|---|
毛竹 Phyllostachys edulis | 0.938 | 0.058 |
菲黄竹 Pleioblastus viridistriatus | 1.198 | 0.073 |
绿槽罗汉竹 Phyllostachys aureosulcata | 0.592 | 0.037 |
唐竹 Sinobambusa tootsik | 0.482 | 0.029 |
紫竹 Phyllostachys nigra | 0.641 | 0.040 |
橄榄竹 Indosasa gigantea | 0.655 | 0.048 |
凤尾竹 Bambusa multiplex | 1.562 | 0.101 |
Table 2 Transpiration rate and stomatal conductance of different bamboo species
种类 Species | 蒸腾速率/(mmol · m-2 · s-1) Transpiration rate | 气孔导度/(mmol · m-2 · s-1) Stomatal conductance |
---|---|---|
毛竹 Phyllostachys edulis | 0.938 | 0.058 |
菲黄竹 Pleioblastus viridistriatus | 1.198 | 0.073 |
绿槽罗汉竹 Phyllostachys aureosulcata | 0.592 | 0.037 |
唐竹 Sinobambusa tootsik | 0.482 | 0.029 |
紫竹 Phyllostachys nigra | 0.641 | 0.040 |
橄榄竹 Indosasa gigantea | 0.655 | 0.048 |
凤尾竹 Bambusa multiplex | 1.562 | 0.101 |
基因登录号 ID | 染色体位置 Chromosome location | 等电点 pI | 相对分子量/kD MW | 长度/aa Length | 跨膜区数量 No. of transmembrane domain |
---|---|---|---|---|---|
PH02Gene00592.t1 | hic_scaffold_24 | 9.63 | 61 635.52 | 558 | 9 |
PH02Gene01933.t1 | hic_scaffold_23 | 9.94 | 62 657.88 | 571 | 10 |
PH02Gene35134.t1 | hic_scaffold_16 | 10.18 | 33 127.26 | 294 | 9 |
PH02Gene08796.t1 | hic_scaffold_6 | 9.87 | 42 370.12 | 384 | 10 |
PH02Gene45054.t2 | hic_scaffold_9 | 9.13 | 64 409.35 | 586 | 10 |
PH02Gene22907.t1 | hic_scaffold_18 | 8.52 | 67 869.30 | 621 | 10 |
PH02Gene22131.t1 | hic_scaffold_16 | 9.26 | 64 301.36 | 583 | 10 |
PH02Gene10869.t1 | hic_scaffold_14 | 9.18 | 67 749.68 | 609 | 10 |
PH02Gene20948.t2 | hic_scaffold_16 | 8.82 | 72 183.69 | 651 | 10 |
PH02Gene48421.t1 | hic_scaffold_14 | 8.70 | 68 667.45 | 613 | 10 |
PH02Gene25481.t1 | hic_scaffold_342 | 8.02 | 73 583.66 | 663 | 9 |
PH02Gene41494.t1 | hic_scaffold_9 | 7.71 | 69 005.90 | 623 | 9 |
PH02Gene06334.t1 | hic_scaffold_7 | 7.03 | 70 670.36 | 640 | 8 |
PH02Gene06335.t1 | hic_scaffold_7 | 7.30 | 70 425.26 | 640 | 10 |
PH02Gene20553.t1 | hic_scaffold_13 | 7.09 | 77 827.50 | 708 | 9 |
Table 3 The SLAC1 gene family of moso bamboo
基因登录号 ID | 染色体位置 Chromosome location | 等电点 pI | 相对分子量/kD MW | 长度/aa Length | 跨膜区数量 No. of transmembrane domain |
---|---|---|---|---|---|
PH02Gene00592.t1 | hic_scaffold_24 | 9.63 | 61 635.52 | 558 | 9 |
PH02Gene01933.t1 | hic_scaffold_23 | 9.94 | 62 657.88 | 571 | 10 |
PH02Gene35134.t1 | hic_scaffold_16 | 10.18 | 33 127.26 | 294 | 9 |
PH02Gene08796.t1 | hic_scaffold_6 | 9.87 | 42 370.12 | 384 | 10 |
PH02Gene45054.t2 | hic_scaffold_9 | 9.13 | 64 409.35 | 586 | 10 |
PH02Gene22907.t1 | hic_scaffold_18 | 8.52 | 67 869.30 | 621 | 10 |
PH02Gene22131.t1 | hic_scaffold_16 | 9.26 | 64 301.36 | 583 | 10 |
PH02Gene10869.t1 | hic_scaffold_14 | 9.18 | 67 749.68 | 609 | 10 |
PH02Gene20948.t2 | hic_scaffold_16 | 8.82 | 72 183.69 | 651 | 10 |
PH02Gene48421.t1 | hic_scaffold_14 | 8.70 | 68 667.45 | 613 | 10 |
PH02Gene25481.t1 | hic_scaffold_342 | 8.02 | 73 583.66 | 663 | 9 |
PH02Gene41494.t1 | hic_scaffold_9 | 7.71 | 69 005.90 | 623 | 9 |
PH02Gene06334.t1 | hic_scaffold_7 | 7.03 | 70 670.36 | 640 | 8 |
PH02Gene06335.t1 | hic_scaffold_7 | 7.30 | 70 425.26 | 640 | 10 |
PH02Gene20553.t1 | hic_scaffold_13 | 7.09 | 77 827.50 | 708 | 9 |
Fig. 3 Phylogenetic tree(A),conserved motif(B)and conserved domains(C)in PheSLAC gene family At:Arabidopsis thaliana;Os:Oryza sativa;PH:Phyllostachys edulis. The same below.
Fig. 4 Key amino acids sites on PheSLAC1 proteins The orange label represents the phosphorylation site,the red label represents the ion selection site,and the green label represents the benzene ring.
Fig. 7 Characterization of PheSLAC overexpression transgenic lines Arabidopsis wild type Col and slac1-3 were used as the control,ACTIN 2 was used as an internal standard.
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