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ACTA HORTICULTURAE SINICA ›› 2013, Vol. 40 ›› Issue (6): 1162-.

• Research Notes • Previous Articles     Next Articles

Development of EPIC Markers in Actinidia and Their Application for Phylogenetic Analysis of Genus Actinidia

LIU Lei1,2,YAO Xiao-hong1,and HUANG Hong-wen3,*   

  1. (1Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture,Wuhan Botanical Garden,Chinese Academy of Sciences,Wuhan 430074,China;2University of Chinese Academy of Sciences,Beijing 100049,China;3Key Laboratory of Biodiversity Conservation and Sustainable Utilization,South China Botanical Garden,Chinese Academy of Sciences,Guangzhou 510650,China)
  • Received:2013-02-22 Online:2013-06-25 Published:2013-06-25

Abstract: In the present study,a set of biparental and single-copy EPIC markers were developed by blasting ESTs database of Actinidia chinensis and A. deliciosa and genome database of Vitis vinifera. A total of 129 EPIC markers were identified with an average identity ≥ 85% in the flanking exon regions. A total of 96 EPIC primer pairs were designed and tested,of which,21 successfully amplified the target regions in A. chinensis and A. deliciosa. The nucleotide diversity(Pi),variable sites,parsimony informative sites varied from 0.003 to 0.069,0.7% to 14.8%,and 0 to 9.4%,respectively. Phylogeny of five Actinidia species using EPIC-1 marker was reconstructed,showing the primers developed here could be successfully amplified in A. erianthaA. fulvicoma var. lanata and A. chrysantha. The results indicated that EPIC markers have good cross-species transferability and can be applied to phylogenetic analysis in Actinidia as universal primers.

Key words: Actinidia, EPIC marker, cross-species amplification, phylogeny