Identification，Expression and Function Analysis of ALDH Gene Family in Lentinula edodes

doi:10.16420/j.issn.0513-353x.2023-0200

Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (5): 1033-1046.doi: 10.16420/j.issn.0513-353x.2023-0200

• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles

Identification，Expression and Function Analysis of ALDH Gene Family in Lentinula edodes

CHEN Jiayue¹, DUAN Yingming¹, ZHOU Yan¹, XIAO Yang¹^,³, BIAN Yinbing¹^,²^,³, GONG Yuhua¹^,^*()

¹ Institute of Applied Mycology，College of Plant Science and Technology，Huazhong Agricultural University，Wuhan 430070，China
² Hubei Hongshan Laboratory，Wuhan 430070，China
³ National Key Laboratory of Agricultural Microbiology，Wuhan 430070，China

Received:2024-01-19 Revised:2024-03-11 Online:2024-05-25 Published:2024-05-29

Abstract

Abstract:

In this study，17，20，19，and 18 ALDH family members were identified in the four published genomes W1-26，NBRC111202，Bin0899，and B17 of Lentinula edodes，respectively. ALDH encoded proteins belong to 11 families，among which family 1 has the largest number of genes. These ALDH genes were distributed in 17，16，16，and 10 scaffolds of four genomes，respectively，and one or two pairs of tandem duplication ALDH genes were found except W1-26 genome. Only four pairs collinear ALDH genes existed between L. edodes and the model fungus Schizophyllum commune. The promoter regions of 17 ALDH genes in the W1-26 genome of L. edodes contained ten kinds of response elements such as light，hormone，oxygen and drought，among which the number of light response elements was significantly more than other elements. The transcriptome and proteome data showed that LeW1-26ALDH1N1，LeW1-26ALDH3L1 and LeW1-26ALDH6C1 had significant responses to different time periods of heat stress. Compared with wild-type S606 strain，LeW1-26ALDH3L1 gene RNAi transformant had 55% decrease of IAA content of mycelia after heat stress at 40 ℃ for 24 h，and had 71% and 45% decrease of mycelial regrowth rate and biomass separately at 25 ℃. These phenotypes of LeW1-26ALDH1N1 and LeW1-26ALDH6C1 gene RNAi transformants did not change compared with wild-type S606 strain. Above all，it is indicated that the decreased gene expression level of LeW1-26ALDH3L1 may lead to mycelia’s lower IAA content under heat stress，and then reduced the thermotolerance of mycelia.

Key words: Lentinula edodes, aldehyde dehydrogenase gene family, IAA biosynthesis, thermotolerance, genome-wide identification

CHEN Jiayue, DUAN Yingming, ZHOU Yan, XIAO Yang, BIAN Yinbing, GONG Yuhua. Identification，Expression and Function Analysis of ALDH Gene Family in Lentinula edodes[J]. Acta Horticulturae Sinica, 2024, 51(5): 1033-1046.

Figures/Tables 9

References 33

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基因号 ID	基因名称 Gene name	引物序列（5'-3'） Primer sequence
LE01Gene01050	LeW1-26Actin	F：AAGAGCGAAACCCTCGTAGATG；R：GCATCCTGTCCTTCTTACCGAG
LE01Gene12649	LeW1-26ALDH1N1	F：CCACGCCCAAAGATGTAGATA；R：CCTGCTGATGTTCCTCCATAA
LE01Gene12738	LeW1-26ALDH3L1	F：ACACTCCCGCCACTACGA；R：CAGCCATCTTCAGGTCACATT
LE01Gene12316	LeW1-26ALDH6C1	F：AGGGCACTAGCGTAATTGG；R：CACTCGTCCTACTCCATGATTT
LE01Gene03960	LeW1-26ALDH1T1	F：TGAGACCAACGAGCAGAAAC；R：CAGGACACCATAGTCAAAGGATAG
LE01Gene08279	LeW1-26ALDH1U1	F：GAAAGGGATGCGCAAGAATTAG；R：CCTCAAACACTGGATGCTATCT
LE01Gene07214	LeW1-26ALDH10D1	F：CTGAAATAGCCCGATTGGAGAG；R：CTGAGCAAGGCCGCATAATA
LE01Gene07676	LeW1-26ALDH5H1	F：GTCGCCTCATAACTCTGGAAA；R：GTTCGCCATAGGTTCGGATAG
LE01Gene05839	LeW1-26ALDH7E1	F：GGCTGTGTATGGATGGAATCT；R：GACAGCACCTCAGCGATAAT
LE01Gene12494	LeW1-26ALDH15B1	F：GGAACGATCCTCGCAGATAAC；R：GAATGACACGTCTCCTCTGAAC
LE01Gene06992	LeW1-26ALDH4C1	F：GGAATGATCGTGCTGCTATCT；R：CTTTCCTTGACCCAGCATAGT
LE01Gene04469	LeW1-26ALDHnew2A1	F：GAATGCACCGAGGCTAACA；R：GCCTCCATAGCGATTACTCTTC
LE01Gene06747	LeW1-26ALDH3M1	F：CTATCGCTGCTGGTTGTACTAT；R：GCGTCCTGGTCAAGGTATTT
LE01Gene01306	LeW1-26ALDHnewA1	F：CCCTTGACGGATACCGATAAAC；R：TTGCGGAGATGGTTTGAGTAG
LE01Gene03575	LeW1-26ALDH18E1	F：CTTACGACACGGAGCATCTT；R：TCGGTGTGATGAGACGAATG
LE01Gene04343	LeW1-26ALDH1N3	F：TCAATCCGGGAAAGATCAAGG；R：GGTGTGGTGTCCGTAAAGATAG
LE01Gene13422	LeW1-26ALDH1N2	F：CTCTATAAGCTCGCTACCCTAATG；R：CCATCCTTTCACGACTCCAA
LE01Gene10357	LeW1-26ALDHψ	F：CTGGGCAATGGACGTTGATA；R：GTGAACATGAGGACGAAGAGAG

基因号 ID	基因名称 Gene name	引物序列（5'-3'） Primer sequence
LE01Gene01050	LeW1-26Actin	F：AAGAGCGAAACCCTCGTAGATG；R：GCATCCTGTCCTTCTTACCGAG
LE01Gene12649	LeW1-26ALDH1N1	F：CCACGCCCAAAGATGTAGATA；R：CCTGCTGATGTTCCTCCATAA
LE01Gene12738	LeW1-26ALDH3L1	F：ACACTCCCGCCACTACGA；R：CAGCCATCTTCAGGTCACATT
LE01Gene12316	LeW1-26ALDH6C1	F：AGGGCACTAGCGTAATTGG；R：CACTCGTCCTACTCCATGATTT
LE01Gene03960	LeW1-26ALDH1T1	F：TGAGACCAACGAGCAGAAAC；R：CAGGACACCATAGTCAAAGGATAG
LE01Gene08279	LeW1-26ALDH1U1	F：GAAAGGGATGCGCAAGAATTAG；R：CCTCAAACACTGGATGCTATCT
LE01Gene07214	LeW1-26ALDH10D1	F：CTGAAATAGCCCGATTGGAGAG；R：CTGAGCAAGGCCGCATAATA
LE01Gene07676	LeW1-26ALDH5H1	F：GTCGCCTCATAACTCTGGAAA；R：GTTCGCCATAGGTTCGGATAG
LE01Gene05839	LeW1-26ALDH7E1	F：GGCTGTGTATGGATGGAATCT；R：GACAGCACCTCAGCGATAAT
LE01Gene12494	LeW1-26ALDH15B1	F：GGAACGATCCTCGCAGATAAC；R：GAATGACACGTCTCCTCTGAAC
LE01Gene06992	LeW1-26ALDH4C1	F：GGAATGATCGTGCTGCTATCT；R：CTTTCCTTGACCCAGCATAGT
LE01Gene04469	LeW1-26ALDHnew2A1	F：GAATGCACCGAGGCTAACA；R：GCCTCCATAGCGATTACTCTTC
LE01Gene06747	LeW1-26ALDH3M1	F：CTATCGCTGCTGGTTGTACTAT；R：GCGTCCTGGTCAAGGTATTT
LE01Gene01306	LeW1-26ALDHnewA1	F：CCCTTGACGGATACCGATAAAC；R：TTGCGGAGATGGTTTGAGTAG
LE01Gene03575	LeW1-26ALDH18E1	F：CTTACGACACGGAGCATCTT；R：TCGGTGTGATGAGACGAATG
LE01Gene04343	LeW1-26ALDH1N3	F：TCAATCCGGGAAAGATCAAGG；R：GGTGTGGTGTCCGTAAAGATAG
LE01Gene13422	LeW1-26ALDH1N2	F：CTCTATAAGCTCGCTACCCTAATG；R：CCATCCTTTCACGACTCCAA
LE01Gene10357	LeW1-26ALDHψ	F：CTGGGCAATGGACGTTGATA；R：GTGAACATGAGGACGAAGAGAG

家族 Family	释义 Definition	基因号 ID	命名 Name	酶号 EC
ALDH1	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12649	LeW1-26ALDH1N1	1.2.1.3
		LE01Gene13422	LeW1-26ALDH1N2	1.2.1.3
		LE01Gene03960	LeW1-26ALDH1T1	1.2.1.3
		LE01Gene04343	LeW1-26ALDH1N3	1.2.1.3
		LE01Gene08279	LeW1-26ALDH1U1	1.2.1.3
	甜菜碱醛脱氢酶Betaine-aldehyde dehydrogenase	LE01Gene10357	LeW1-26ALDHψ	1.2.1.8
ALDH3	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12738	LeW1-26ALDH3L1	1.2.1.3
		LE01Gene06747	LeW1-26ALDH3M1	1.2.1.3
ALDH4	L-谷氨酸γ-半醛脱氢酶L-glutamate gamma-semialdehyde dehydrogenase	LE01Gene06992	LeW1-26ALDH4C1	1.2.1.88
ALDH5	琥珀酸半醛脱氢酶Succinate-semialdehyde dehydrogenase	LE01Gene07676	LeW1-26ALDH5H1	1.2.1.16
ALDH6	甲基丙二酸半醛脱氢酶Methylmalonate-semialdehyde dehydrogenase	LE01Gene12316	LeW1-26ALDH6C1	1.2.1.27
ALDH7	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene05839	LeW1-26ALDH7E1	1.2.1.3
ALDH10	醛脱氢酶Aldehyde dehydrogenase[NAD（P）+]	LE01Gene07214	LeW1-26ALDH10D1	1.2.1.5
ALDH15	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12494	LeW1-26ALDH15B1	1.2.1.3
ALDH18	谷氨酸-5-半醛脱氢酶Glutamate-5-semialdehyde dehydrogenase	LE01Gene03575	LeW1-26ALDH18E1	1.2.1.41
ALDHnew	醛脱氢酶Aldehyde dehydrogenase [NAD（P）+]	LE01Gene01306	LeW1-26ALDHnewA1	1.2.1.5
ALDHnew2	甜菜碱醛脱氢酶Betaine-aldehyde dehydrogenase	LE01Gene04469	LeW1-26ALDHnew2A1	1.2.1.8

家族 Family	释义 Definition	基因号 ID	命名 Name	酶号 EC
ALDH1	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12649	LeW1-26ALDH1N1	1.2.1.3
		LE01Gene13422	LeW1-26ALDH1N2	1.2.1.3
		LE01Gene03960	LeW1-26ALDH1T1	1.2.1.3
		LE01Gene04343	LeW1-26ALDH1N3	1.2.1.3
		LE01Gene08279	LeW1-26ALDH1U1	1.2.1.3
	甜菜碱醛脱氢酶Betaine-aldehyde dehydrogenase	LE01Gene10357	LeW1-26ALDHψ	1.2.1.8
ALDH3	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12738	LeW1-26ALDH3L1	1.2.1.3
		LE01Gene06747	LeW1-26ALDH3M1	1.2.1.3
ALDH4	L-谷氨酸γ-半醛脱氢酶L-glutamate gamma-semialdehyde dehydrogenase	LE01Gene06992	LeW1-26ALDH4C1	1.2.1.88
ALDH5	琥珀酸半醛脱氢酶Succinate-semialdehyde dehydrogenase	LE01Gene07676	LeW1-26ALDH5H1	1.2.1.16
ALDH6	甲基丙二酸半醛脱氢酶Methylmalonate-semialdehyde dehydrogenase	LE01Gene12316	LeW1-26ALDH6C1	1.2.1.27
ALDH7	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene05839	LeW1-26ALDH7E1	1.2.1.3
ALDH10	醛脱氢酶Aldehyde dehydrogenase[NAD（P）+]	LE01Gene07214	LeW1-26ALDH10D1	1.2.1.5
ALDH15	醛脱氢酶Aldehyde dehydrogenase（NAD+）	LE01Gene12494	LeW1-26ALDH15B1	1.2.1.3
ALDH18	谷氨酸-5-半醛脱氢酶Glutamate-5-semialdehyde dehydrogenase	LE01Gene03575	LeW1-26ALDH18E1	1.2.1.41
ALDHnew	醛脱氢酶Aldehyde dehydrogenase [NAD（P）+]	LE01Gene01306	LeW1-26ALDHnewA1	1.2.1.5
ALDHnew2	甜菜碱醛脱氢酶Betaine-aldehyde dehydrogenase	LE01Gene04469	LeW1-26ALDHnew2A1	1.2.1.8

Identification，Expression and Function Analysis of ALDH Gene Family in Lentinula edodes

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