Vitis ficifolia is an important wild resource in China. In this study,the whole genome resequencing of V. ficifolia was completed using Illumina HiSeq PE150 sequencing platform. The chloroplast genome was assembled. The results of the annotation indicated that the chloroplast genome of V. ficifolia has a total length of 160 751 bp,which is a typical tetrad structure. The length of LSC,IR and SSC regions are 88 971,26 355 and 19 070 bp,respectively. The chloroplast genome contains a total of 133 genes,including 88 protein-coding genes,8 rRNA genes,and 37 tRNA genes. We found 84 SSR loci in the V. ficifolia chloroplast genome,of which the number of mononucleotide,dinucleotide,trinucleotide,tetranucleotide and pentanucleotide repeat motifs was 55,8,9,9 and 3,respectively. The NJ tree using chloroplast genome sequences of 32 species including 5 Vitis species was contrusted by MEGA software. The results showed that V. ficifolia had a close genetic relationship with V. amurensis,Pinot Noir(V. vinifera),V. aestivalis and V. rotundifolia.
In order to study protein expression characteristics of grape pericarp in different coloring periods,early,middle and later stages of pericarp coloring were studied. 2-DE(Two-dimensional gel electrophoresis)and MALDI-TOF/TOF-MS(mass spectrometry technology)was used to analyze the differences of protein expression in pericarp at different coloring stages. (1) 2-DE revealed that there were 1 050 highly repeated protein spots during 3 periods of pericarp coloring,and 108 of 162 differential- expressed proteins were identified,87 proteins were mapped to the grape database. Twenty proteins differentially expressed during 3 periods of pericarp coloring,and the number of differential-expressed proteins was increasing with the deepening process of pericarp color. (2) GO enrichment analysis showed ATPβ(ATPase β subunit)was highly enriched in the ribose phosphate metabolic process,which was of great significance to the energy requirement of physiological metabolism in the early stage of coloring. (3) KEGG analysis showed that many KEGG pathways,such as carbon metabolism,photosynthetic carbon fixation,pentose phosphate,amino acid biosynthesis,metabolic pathways etc,were significantly enriched at different stages of pericarp coloration. (4) qRT-PCR analysis showed that the S-adenosylmethionine synthetase 4 gene(VvMETK4)had the highest expression level in the later stage of pericarp coloring.
The purpose of this study is to elucidate the regulating mechanism of silicon and calcium on the growth and development of cucumber(Cucumis sativus L.).‘Jinyou 35’cucumbers were used as experimental materials. We investigated the effect of single silicon(Si),calcium(Ca)and silicon combined with calcium(Si + Ca)on the photosynthetic characteristics,yield and quality of cucumber cultivated by substrate in pot,using the non-treated plants as the control. The results showed that Si,Ca and Si + Ca all increased the net photosynthetic rate(Pn)of cucumber leaves. We noticed that the stomatal conductance(Gs)and transpiration rate(Tr)of Si-treated leaves were significantly lower than the control,while Ca treatments were significantly higher than the control. However,there were no significant differences in Gs and Tr between the plants treated with Si + Ca and the control. Ca and Si + Ca led to an increase in the intercellular CO2 concentration(Ci),but Si-treated plants showed no obvious difference in Ci compared with the control. Si,Ca and Si + Ca improved the activities of Rubisco activase(RCA),fructose-1,6-bisphosphatase(FBPase),sedoheptulose-1,7-bisphosphatase(SBPase),fructose-1,6- bisphosphate aldolase(FBA)and transketolase(TK). Si + Ca also increased the activity of ribulose-1,5- bisphosphate carboxylase(RuBPCase),whereas Si and Ca did not affect it. Si,Ca and Si + Ca treated plants also showed a distinct increase in mRNA abundance of Rubisco large-subunit(rbcL)and small-subunit(rbcS),RCA,FBP,SBP,FBA and TK,compared with the control. There was no significant differences in the maximum photochemical efficiency of PSⅡ(Fv/Fm)under dark adaptation in Si,Ca and Si + Ca treated leaves,but they showed significantly higher actual photochemical efficiency of PSⅡ(ΦPSⅡ)than the control. Si,Ca and Si + Ca promoted plant growth,and their yield increased by 11.75%,14.23% and 21.28% respectively compared with the control,increased the content of soluble sugars,proteins,free amino acids and vitamin C,whereas decreased the nitrite and tannin contents significantly. These data suggest that Si,Ca and Si + Ca can improve the activities and mRNA expression of key enzymes in Calvin-cycle of cucumber leaves,strengthen the photosynthetic carbon assimilation capacity,and enhance the photochemical efficiency,consequently promote plant growth,yield and quality. Si + Ca treatment revealed the highest photosynthetic capacity,maximum growth,and the optimal quality and yield among treatments.
In this study,based on the reference genome we identified 87 NLR family genes in Brassica oleracea and performed evolution,comparative,and expression analysis. Gene structures and motif composition analysis indicated that the 87 NLR genes were assigned to five subclasses:NB-LRR(34),CC-NB-LRR(6),TIR-NB-LRR(45),RPW8-NB-LRR(1)and CC-TIR-NB-LRR(1). Chromosome location analysis revealed that the NLR genes were unevenly distributed in single or in clusters on nine chromosomes. Evolution analysis showed that 35 NLR genes were homologous with Chinese cabbage,while the other 52 genes were specific to cabbage. Expression profiling of NLR genes identified several differential expression genes related to resistance to Fusarium wilt,black rot,clubroot,downy mildew and powdery mildew in Brassica oleracea,and results showed that expression of NLR genes participating in resistance response to various diseases exhibited significant difference,which may indicate the specific recognition of NLR genes for diverse pathogens.
‘Shantian 9’is developed by crossing E13 as female parent with C20 as male parent. The whole growth period is 85–100 days and the fruit development period is 28–32 days. The fruit is short pear shaped with yellow-white skin. The flesh is green-white. The central soluble solids content is 14.7%. The average fruit weight is 500 g. The cultivar has good tolerance to stress and transportation. It is suitable for protected-field and open-field cultivation in Heilongjiang,Hebei,Gansu,Xinjiang,etc.