Acta Horticulturae Sinica ›› 2025, Vol. 52 ›› Issue (9): 2395-2409.doi: 10.16420/j.issn.0513-353x.2024-0814
• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles
ZHANG Ting1, WANG Botao2, ZHANG Lei2, SONG Lihua1, CAO Bing1,3, MA Yaping1,*()
Received:
2025-05-09
Revised:
2025-06-27
Online:
2025-09-25
Published:
2025-09-24
Contact:
MA Yaping
ZHANG Ting, WANG Botao, ZHANG Lei, SONG Lihua, CAO Bing, MA Yaping. Identification of the LbWaxy Gene Family in Lycium barbarum and Analysis of Gene Expression Characteristics Under High Concentrations of CO2[J]. Acta Horticulturae Sinica, 2025, 52(9): 2395-2409.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2024-0814
基因 Gene | 上游引物(5′-3′) Forward primer | 下游引物(5′-3′) Reverse primer |
---|---|---|
ACTIN | CCATCTACGAGGGTTACGCTTTG | AGTCAAGAGCCACATAGGCAAGC |
LbWaxy1 | GATGGTTCTGGCTCTGTTGTTGG | CAGCATCCTCACTCAATTCATCTCC |
LbWaxy2 | GCCATTGTTCCTCCTCACTCATTC | GCGTCTACTGAAGTTGCTCCAC |
LbWaxy3 | CACAGATGATTGGAATGCGTTATGG | TCCTTCAAAGACAAACCCGTTAGC |
LbWaxy4 | GCAAGGTGGTCAGCAAGGTTC | AAGGAGATTAAGAACGGCAGACTTG |
LbWaxy5 | GATGGTCGGGATTGGTTCAACTC | AGTAGTCAAGAGCAGGTCGGTTC |
LbWaxy6 | AGCAAGCATCCATTATTCTCGTAGG | ACACCTCTCCTTGAAGCCATCC |
LbWaxy7 | GGCAGGCATGACCTTGAACAG | CCAGCAGTTATACGATGAGCAGTC |
Table 1 Primer sequences of quantitative real time PCR
基因 Gene | 上游引物(5′-3′) Forward primer | 下游引物(5′-3′) Reverse primer |
---|---|---|
ACTIN | CCATCTACGAGGGTTACGCTTTG | AGTCAAGAGCCACATAGGCAAGC |
LbWaxy1 | GATGGTTCTGGCTCTGTTGTTGG | CAGCATCCTCACTCAATTCATCTCC |
LbWaxy2 | GCCATTGTTCCTCCTCACTCATTC | GCGTCTACTGAAGTTGCTCCAC |
LbWaxy3 | CACAGATGATTGGAATGCGTTATGG | TCCTTCAAAGACAAACCCGTTAGC |
LbWaxy4 | GCAAGGTGGTCAGCAAGGTTC | AAGGAGATTAAGAACGGCAGACTTG |
LbWaxy5 | GATGGTCGGGATTGGTTCAACTC | AGTAGTCAAGAGCAGGTCGGTTC |
LbWaxy6 | AGCAAGCATCCATTATTCTCGTAGG | ACACCTCTCCTTGAAGCCATCC |
LbWaxy7 | GGCAGGCATGACCTTGAACAG | CCAGCAGTTATACGATGAGCAGTC |
基因名称 Gene name | 基因ID Gene ID | 外显子长度/bp CDS | 理化性质 Physicochemical properties | ||||
---|---|---|---|---|---|---|---|
分子量/KD Molecular weight | 等电点 Theoretical Pi | 不稳定指数 Instability index | 脂肪族指数 Aliphatic index | 亲水性 Grand average of hydrophilicity | |||
LbWaxy1 | Lbar03T009702.1 | 2 427 | 71.14 | 5.33 | 32.62 | 85.42 | -0.165 |
LbWaxy2 | Lbar04T011539.1 | 3 573 | 67.19 | 8.29 | 26.61 | 89.36 | -0.076 |
LbWaxy3 | Lbar11T036582.1 | 2 421 | 69.50 | 5.71 | 40.99 | 86.48 | -0.207 |
LbWaxy4 | Lbar12T040012.1 | 4 352 | 118.86 | 5.66 | 52.65 | 90.11 | -0.463 |
LbWaxy5 | Lbar12T040660.1 | 4 693 | 158.23 | 5.06 | 41.41 | 78.66 | -0.508 |
LbWaxy6 | Lbar12T041078.5 | 1 863 | 70.42 | 6.12 | 40.81 | 93.87 | -0.244 |
LbWaxy7 | Lbar12T041516.1 | 3 000 | 83.44 | 6.06 | 43.01 | 79.14 | -0.410 |
基因名称 Gene name | 基因ID Gene ID | 蛋白长度/aa Protein | 第二结构 Secondary structure | 亚细胞定位 Subcellular | |||
α螺旋/% α helix | 自由基/% Random coil | 延伸链/% Extended strand | |||||
LbWaxy1 | Lbar03T009702.1 | 646 | 33.59 | 50.77 | 15.63 | 细胞质 Cytoplasmic | |
LbWaxy2 | Lbar04T011539.1 | 613 | 34.42 | 53.18 | 12.40 | 叶绿体 Chloroplast | |
LbWaxy3 | Lbar11T036582.1 | 619 | 34.73 | 52.67 | 12.60 | 细胞质 Cytoplasmic | |
LbWaxy4 | Lbar12T040012.1 | 1 043 | 57.62 | 34.32 | 8.05 | 细胞核 Nuclear | |
LbWaxy5 | Lbar12T040660.1 | 1 408 | 36.79 | 48.79 | 14.42 | 细胞质 Cytoplasmic | |
LbWaxy6 | Lbar12T041078.5 | 620 | 44.19 | 43.39 | 12.42 | 细胞质 Cytoplasmic | |
LbWaxy7 | Lbar12T041516.1 | 754 | 39.52 | 49.20 | 11.27 | 叶绿体 Chloroplast |
Table 2 Feature analysis of LbWaxy in Lycium barbarum L.
基因名称 Gene name | 基因ID Gene ID | 外显子长度/bp CDS | 理化性质 Physicochemical properties | ||||
---|---|---|---|---|---|---|---|
分子量/KD Molecular weight | 等电点 Theoretical Pi | 不稳定指数 Instability index | 脂肪族指数 Aliphatic index | 亲水性 Grand average of hydrophilicity | |||
LbWaxy1 | Lbar03T009702.1 | 2 427 | 71.14 | 5.33 | 32.62 | 85.42 | -0.165 |
LbWaxy2 | Lbar04T011539.1 | 3 573 | 67.19 | 8.29 | 26.61 | 89.36 | -0.076 |
LbWaxy3 | Lbar11T036582.1 | 2 421 | 69.50 | 5.71 | 40.99 | 86.48 | -0.207 |
LbWaxy4 | Lbar12T040012.1 | 4 352 | 118.86 | 5.66 | 52.65 | 90.11 | -0.463 |
LbWaxy5 | Lbar12T040660.1 | 4 693 | 158.23 | 5.06 | 41.41 | 78.66 | -0.508 |
LbWaxy6 | Lbar12T041078.5 | 1 863 | 70.42 | 6.12 | 40.81 | 93.87 | -0.244 |
LbWaxy7 | Lbar12T041516.1 | 3 000 | 83.44 | 6.06 | 43.01 | 79.14 | -0.410 |
基因名称 Gene name | 基因ID Gene ID | 蛋白长度/aa Protein | 第二结构 Secondary structure | 亚细胞定位 Subcellular | |||
α螺旋/% α helix | 自由基/% Random coil | 延伸链/% Extended strand | |||||
LbWaxy1 | Lbar03T009702.1 | 646 | 33.59 | 50.77 | 15.63 | 细胞质 Cytoplasmic | |
LbWaxy2 | Lbar04T011539.1 | 613 | 34.42 | 53.18 | 12.40 | 叶绿体 Chloroplast | |
LbWaxy3 | Lbar11T036582.1 | 619 | 34.73 | 52.67 | 12.60 | 细胞质 Cytoplasmic | |
LbWaxy4 | Lbar12T040012.1 | 1 043 | 57.62 | 34.32 | 8.05 | 细胞核 Nuclear | |
LbWaxy5 | Lbar12T040660.1 | 1 408 | 36.79 | 48.79 | 14.42 | 细胞质 Cytoplasmic | |
LbWaxy6 | Lbar12T041078.5 | 620 | 44.19 | 43.39 | 12.42 | 细胞质 Cytoplasmic | |
LbWaxy7 | Lbar12T041516.1 | 754 | 39.52 | 49.20 | 11.27 | 叶绿体 Chloroplast |
Fig. 4 The unrooted phylogenetic tree of Waxy gene family in Lycium barbarum,Capsicum annuum,Solanum melongena,S. lycopersicum,S. tuberosum and Arabidopsis thaliana
Fig. 8 Transcriptome analysis of Lycium barbarum treated with elevated CO2 concentration CK:Normal CO2 concentration;CO2:Elevated CO2 concentration;each experiment was repeated three times
Fig. 9 Expression analysis of LbWaxy genes in five organs under elevated CO2 treatment S1:Young fruit stage;S2:Green fruit stage;S3:Color turning stage;S4:Initial ripening stage;S5:Mature stage
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