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园艺学报 ›› 2014, Vol. 41 ›› Issue (8): 1573-1582.

• 果树 • 上一篇    下一篇

核桃Y2SK2型脱水素基因JrDHN的克隆、表达和单核苷酸多态性分析

徐 丽,陈 新,魏海蓉,张力思,宗晓娟,王甲威,朱东姿,刘庆忠*   

  1. (山东省果树研究所,山东省果树生物技术重点实验室,山东泰安 271000)
  • 收稿日期:2014-05-23 出版日期:2014-08-25 发布日期:2014-08-25

Molecular Cloning,Expression and Single Nucleotide Polymorphisms Analysis of Typical Y2SK2 Dehydrin in Juglans

XU Li,CHEN Xin,WEI Hai-rong,ZHANG Li-si,ZONG Xiao-juan,WANG Jia-wei,ZHU Dong-zi,and LIU Qing-zhong*   

  1. (Shandong Province Key Laboratory of Fruit Tree Biotechnology,Shandong Institute of Pomology,Tai’an,Shandong 271000,China)
  • Received:2014-05-23 Online:2014-08-25 Published:2014-08-25

摘要: 采用RT-PCR和RACE技术从‘香玲’核桃(Juglans regia L.‘Xiangling’)叶片中克隆了1个脱水素基因JrDHN(GenBank 登录号KC503061.1),其全长1 056 bp,具有528 bp的开放阅读框,编码175个氨基酸组成的多肽,具有LEA家族成员的特征多肽序列,属于典型的Y2SK2型脱水素。以核桃18S基因为内参,对‘香玲’核桃JrDHN在4 ℃胁迫下的表达模式进行了初步的研究,结果表明低温诱导下叶片中JrDHN的表达增加,4 ℃处理4 h后达到最大值;自然越冬条件下,花芽中JrDHN表达量呈先上升后下降的趋势,在12月份表达量最高,推测JrDHN在核桃对低温胁迫响应中发挥重要功能。‘香玲’JrDHN在雌花中表达量高,其次是叶片和树皮,在花芽中最低。单核苷酸多态性分析JrDHN序列中有30个SNPs位点和11个Indels;单倍型分析显示12份核桃材料可分为10个单倍型,单倍型多样性为0.9697。

关键词: 核桃, 脱水素基因, 定量RT-PCR, 单核苷酸多态性

Abstract: Reverse transcription PCR(RT-PCR)and rapid amplification of cDNA ends(RACE)technologies were used to clone JrDHN(GenBank accession No. KC503061.1)from leaves of walnut (Juglans regia L.‘Xiangling’). Cloned JrDHN gene was 1 056 bp in length,containing 528 bp ORF encoded 175 amino acids. Amino acid sequence analysis indicated thatJrDHN possessed typical characters of LEA family. qRT-PCR analysis showed that the expression of JrDHN in Xiangling walnutwas induced by low temperature and peaked at 4 hours after exposed to 4 ℃ low temperature. Under the condition of natural overwintering,JrDHN gene expression increased firstly,reached to a peak in December,followed by decrease. It was deduced that JrDHN mayplay important roles in tolerating to cold stress. The transcripts of JrDHN could be detected in female flower,bark,flower bud and leaf of Xiangling walnut,especially high expression in female flower. Additionally,after analyzing single nucleotide polymorphism of JrDHN,30 SNPs and 11 Insertions/Deletions(Indels)were detected among 12 walnut accessions. Haplotype analysis showed that 12 walnut accessions were divided into ten haplotypes,and the haplotype diversity was 0.9697.

Key words: Juglans, dehydrin gene, qRT-PCR, single nucleotide polymorphism

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