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园艺学报 ›› 2019, Vol. 46 ›› Issue (10): 2037-2046.doi: 10.16420/j.issn.0513-353x.2018-1074

• 研究报告 • 上一篇    下一篇

苹果茎痘病毒内蒙古分离物基因组序列和生物学特征研究

孙平平,鞠明岫,马 强*,李正男*   

  1. 内蒙古农业大学园艺与植物保护学院,呼和浩特 010018
  • 出版日期:2019-10-25 发布日期:2019-10-25
  • 基金资助:
    内蒙古农业大学高层次人才科研启动金项目(NDYB2018-3);国家自然科学基金地区科学基金项目(31860540)

Genome and Biology of an Isolate of Apple stem pitting virus from Inner Mongolia,China

SUN Pingping,JU Mingxiu,MA Qiang*,and LI Zhengnan*   

  1. College of Horticulture and Plant Protection,Inner Mongolia Agricultural University,Huhhot 010018,China
  • Online:2019-10-25 Published:2019-10-25

摘要: 利用RT-PCR结合RACE技术获得了苹果茎痘病毒(Apple stem pitting virus,ASPV)内蒙古‘金红’苹果分离物(ASPV-NM)全长基因组序列(登录号:MK239268)。该分离物基因组除去Poly A尾共有9 286个核苷酸,与17个已经报道的ASPV分离物全长基因组序列核酸一致性为70.6% ~ 79.2%;基于全长基因组、RNA依赖的RNA聚合酶(RNA-dependent RNA polymerase,RdRp)基因和外壳蛋白(Coat protein,CP)基因分别将分离物ASPV-NM划分到组Ⅲ、组Ⅲ和组Ⅰ;在ASPV-NM基因组中检测到1个显著的重组事件;将ASPV-NM摩擦接种到西方烟37B上,可引起显著的褪绿黄化症状,利用透射电子显微镜可以观察到典型的病毒粒子。

关键词: 苹果茎痘病毒, 内蒙古, RACE, 重组

Abstract: One Apple spot pitting virus(ASPV)isolate NM was collected from an infected‘Jinhong’apple in Hohhot,Inner Mongolia,China,and its complete genome sequence was determined by RT-PCR and RACE techniques. The Genbank accession No. is MK239268. The single-stranded positive RNA genome of ASPV-NM had 9286 nucleotides, excluding the poly A tail, and its shared sequence identities with the 17 published ASPV genomes in NCBI were from 70.6% to 79.2%. The phylogenetic trees based on complete genome,RNA-dependent RNA polymerase(RdRp)and Coat protein(CP)sequences showed ASPV-NM clustered into Group Ⅲ,Ⅲ andⅠ,respectively. One clear recombination event was identified in the isolate ASPV-NM. The ASPV-NM was sap-inoculated into Nicotiana occidentalis 37B,causing typical symptoms of yellow spots and chlorosis,and the infection was further confirmed by the transmission electron microscope.

Key words: Apple stem pitting virus, Inner Mongolia, RACE, recombination

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