Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (8): 1949-1963.doi: 10.16420/j.issn.0513-353x.2023-0946
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WEN Songqin1, LI Jialin1, CHI Zhuoheng1, XIA Yan1, WANG Shuming1, WU Di1, HAO Yawen2, GUO Qigao1, LIANG Guolu1, JING Danlong1,*()
Received:
2024-01-19
Revised:
2024-05-31
Online:
2024-08-25
Published:
2024-08-22
Contact:
JING Danlong
WEN Songqin, LI Jialin, CHI Zhuoheng, XIA Yan, WANG Shuming, WU Di, HAO Yawen, GUO Qigao, LIANG Guolu, JING Danlong. The Role of Light and Temperature Related Genes Alternative Splicing in Regulating Plant Flowering Time[J]. Acta Horticulturae Sinica, 2024, 51(8): 1949-1963.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2023-0946
Fig. 1 Schematic representation of seven variable splicing types (a-g) in response to light temperature signals Quoted by Dikaya et al.,2021,with minor modifications.
物种 Species | 基因 Gene | 剪接类型 Types of alternative splicing | 参考文献 Reference |
---|---|---|---|
拟南芥 Arabidopsis thaliana | PHYA | 内含子保留,选择性供点 Intron retention,selective donor | Shikata et al., |
CRY2 | 选择性受点Selective acceptor | Shikata et al., | |
ZTL | 内含子保留 Intron retention | Lamesch et al., | |
COP1 | 选择性受点 Selective acceptor | Zhou et al., | |
HY5 | 内含子保留,选择性供点 Intron retention,selective donor | Zhang et al., | |
HYH | 内含子保留,选择性受点 Intron retention,selective acceptor | Sibout et al., | |
LHY | 内含子保留,外显子跳跃 Intron retention,exon skipping | Zhang et al., | |
CCA1 | 内含子保留,选择性供点 Intron retention,selective donor | Shang et al., | |
TOC1 | 内含子保留 Intron retention | Shang et al., | |
RVE8 | 选择性受点 Selective acceptor | Shikata et al., | |
JMJD5 | 内含子保留 Intron retention | Shikata et al., | |
TIC | 内含子保留 Intron retention | Mancini et al., | |
CKB3 | 内含子保留,选择性受点Intron retention,selective acceptor | Mancini et al., | |
PIF6 | 内含子保留 Intron retention | Penfield et al., | |
SPA3 | 内含子保留 Intron retention | Shikata et al., | |
RRC1 | 外显子跳跃 Exon skipping | Xin et al., | |
BBX25 | 内含子保留 Intron retention | Xin et al., | |
PIF3 | 内含子保留 Intron retention | Dong et al., | |
梨Pyrus spp. | ELF3 | 内含子保留,选择性供点Intron retention,selective donor | Xin et al., |
Table 1 Alternative splicing of photomorphogenesis-related genes
物种 Species | 基因 Gene | 剪接类型 Types of alternative splicing | 参考文献 Reference |
---|---|---|---|
拟南芥 Arabidopsis thaliana | PHYA | 内含子保留,选择性供点 Intron retention,selective donor | Shikata et al., |
CRY2 | 选择性受点Selective acceptor | Shikata et al., | |
ZTL | 内含子保留 Intron retention | Lamesch et al., | |
COP1 | 选择性受点 Selective acceptor | Zhou et al., | |
HY5 | 内含子保留,选择性供点 Intron retention,selective donor | Zhang et al., | |
HYH | 内含子保留,选择性受点 Intron retention,selective acceptor | Sibout et al., | |
LHY | 内含子保留,外显子跳跃 Intron retention,exon skipping | Zhang et al., | |
CCA1 | 内含子保留,选择性供点 Intron retention,selective donor | Shang et al., | |
TOC1 | 内含子保留 Intron retention | Shang et al., | |
RVE8 | 选择性受点 Selective acceptor | Shikata et al., | |
JMJD5 | 内含子保留 Intron retention | Shikata et al., | |
TIC | 内含子保留 Intron retention | Mancini et al., | |
CKB3 | 内含子保留,选择性受点Intron retention,selective acceptor | Mancini et al., | |
PIF6 | 内含子保留 Intron retention | Penfield et al., | |
SPA3 | 内含子保留 Intron retention | Shikata et al., | |
RRC1 | 外显子跳跃 Exon skipping | Xin et al., | |
BBX25 | 内含子保留 Intron retention | Xin et al., | |
PIF3 | 内含子保留 Intron retention | Dong et al., | |
梨Pyrus spp. | ELF3 | 内含子保留,选择性供点Intron retention,selective donor | Xin et al., |
Fig. 3 Temperature affects the regulation of alternative splicing on flowering time FLM-α,β,γ,δ:FLM four splice protein variants;MAF2-Var1,Var2,Var5:MAF2 three splicing protein variants;COOLAIR-classIi,classIIi,classIIii:The FLC antonym expresses three types of splicing variants of COOLAIR;SVP:SVP protein. Quoted by Lee et al.(2013),Shang et al. (2017)with minor modifications.
剪接因子 Splicing factor | 蛋白类型 Protein type | 剪接形式 Forms of splicing | 参考文献 Reference |
---|---|---|---|
U2AF65a/b | U2辅助因子的亚基 Subunits of U2 auxiliary factors | FLC内含子 FLC introns | Park et al., |
BRR2a | U5小核糖体蛋白U5 snRNP | FLC内含子1、5、6 FLC intron1,5 and 6 | Mahrez et al., |
RZ-1B,RZ-1C | hnRNP蛋白 hnRNP proteins | FLC内含子1 FLC intron 1 | Wu et al., |
KHZ1,KHZ2 | RNA结合蛋白 RNA-binding proteins | FLC内含子 FLC introns | Yan et al., |
PRP8 | 核心剪接体组件 Core spliceosome component | COOLAIR内含子 COOLAIR introns | Marquardt et al., |
Table 2 Splicing factors involved in pre-mRNA splicing of FLC and COOLAIR
剪接因子 Splicing factor | 蛋白类型 Protein type | 剪接形式 Forms of splicing | 参考文献 Reference |
---|---|---|---|
U2AF65a/b | U2辅助因子的亚基 Subunits of U2 auxiliary factors | FLC内含子 FLC introns | Park et al., |
BRR2a | U5小核糖体蛋白U5 snRNP | FLC内含子1、5、6 FLC intron1,5 and 6 | Mahrez et al., |
RZ-1B,RZ-1C | hnRNP蛋白 hnRNP proteins | FLC内含子1 FLC intron 1 | Wu et al., |
KHZ1,KHZ2 | RNA结合蛋白 RNA-binding proteins | FLC内含子 FLC introns | Yan et al., |
PRP8 | 核心剪接体组件 Core spliceosome component | COOLAIR内含子 COOLAIR introns | Marquardt et al., |
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