Advances in Genetic Mapping and Candidate Gene Analysis of Important Traits in Pepper（Capsicum spp.）

doi:10.16420/j.issn.0513-353x.2023-0014

Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (3): 669-696.doi: 10.16420/j.issn.0513-353x.2023-0014

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Advances in Genetic Mapping and Candidate Gene Analysis of Important Traits in Pepper（Capsicum spp.）

ZHANG Zhenghai, WANG Yongfu, WU Huamao, YU Hailong, CAO Yacong, FENG Xigang, WANG Lihao^*()

State Key Laboratory of Vegetable Biobreeding，Institute of Vegetables and Flowers，Chinese Academy of Agricultural Sciences，Beijing 100081，China

Received:2023-04-14 Revised:2023-12-19 Online:2024-03-25 Published:2024-03-22
Contact: WANG Lihao

Abstract

Abstract:

In this paper，the research progress of pepper（Capsicum spp.）after whole genome sequencing in the past ten years were summarized，including the construction of intraspecific and interspecific genetic maps，whole genome association analysis，and genetic mapping and candidate gene analysis of horticultural traits，fruit traits and disease resistance.

Key words: Capsicum spp., genetic mapping, genome wide association analysis, bulked segregant analysis, gene fine mapping

ZHANG Zhenghai, WANG Yongfu, WU Huamao, YU Hailong, CAO Yacong, FENG Xigang, WANG Lihao. Advances in Genetic Mapping and Candidate Gene Analysis of Important Traits in Pepper（Capsicum spp.）[J]. Acta Horticulturae Sinica, 2024, 51(3): 669-696.

Figures/Tables 3

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性状 Trait	遗传位点/基因 Locus/gene	注释基因 Annotated gene	材料 Material	定位方法 Mapping method	群体类型及大小 Population type and size	参考文献 Reference
下胚轴花青素积累Hypocotyl anthocyanin accumulation	CaTTG1	Capana03g001813	WT × Cha1	BSA	389 F₂，125 BC₁	Wang et al.,2023a
花药和茎花青素积累Anthres and stems anthocyanin accumulation	ayw	CA11g18550	14-Z4 × 14-Z5	连锁图，转录组测序Linkage map，transcriptome sequencing	253 F₂	Wang et al.,2023c
光敏黄叶突变体 Photosensitive leaf-yellowing	CaLY1	Capana09g000166	R24 × WT21	BSA	600 F₂	Yang et al.,2023
丛生花序Fasciculate inflorescence	-	Capana11g001832	L816 × CL74	BSA	1 148 F₂	Lv et al.,2019
果实朝向	UP12.1	Capana12g000985	BB3 × chiltepin	QTL	225 BC₁	Hu et al.,2021
Fruit orientation	UP	Capana12g000954	Ac1979 × Qiemen	GWAS	360 F₂	Cao et al.,2022
开花时间 Flowing time	APETALA2(AP2)	CA02g14540	USDA-early × USDA-late	BSA	230 F₂	Borovsky et al., 2015
	CaFFN	CA02g14540	B9431 × A145	BSA	297 F₂	Yuan et al.,2021
	APETALA2	Capana02g000700	740 × CA1	QTL	150 F₂	Zhu et al.,2019b
畸形果突变体 Malformed fruit mutant	maf-1(CaLFY)	CA03g3134	M1-62	BSA	95 M1	Tanaka et al.,2022
心室数Locule number	CaBRX	Capana01g004285	GS6 × Qiemen	QTL	200 F₂，186 F₃	Ma et al.,2022
果形Fruit shape	fs10/CaOFP20	Capana10g001230/CA10g10680	5226 × 1901	BSA，QTL	240 F₂	Borovsky et al.,2022
果实角质层合成 Fruit cuticle biosynthesis	CaFCD1	Capana12g002114	8214 × fcd1	BSA	782 F₂，138 BC₁	Wang et al.,2023b
辣椒成熟果实脱落性 The deciduous character of ripe fruit	S	Capana10g002229	BA3 × YNXML，BB3 × Chiltepin	QTL，连锁图Linkage map	155 F₂，254 BC₁ F₁，4 217 BC₁F₂	Hu et al.,2023
未熟果色（深绿）Immature fruit color (dark green)	pc10/CaGLK2	-	1154 × PI 152225	连锁图 Linkage map	182 F₂	Brand et al.,2012,2014
未熟果色（浅绿）Immature fruit color (light green)	pc1/CcLOL1	-	1154 × NIL 86-45	BSA，连锁图Linkage map	624 F₂	Borovsky et al.,2019
	CaPP2C35	Capana10g001701	17C827 × 17C685	BSA，GWAS	941 F₂，287 pepper accessions	Wu et al.,2022
未熟果色（浅黄）Immature fruit color (light yellow)	ly	Capana09g000680， Capana09g000671， Capana09g000715， Capana09g000692	CSJ009 × CSJ010	BSA，连锁图Linkage map	220 F₂	Song et al.,2022
未熟果色（紫色）Immature fruit color (purple)	Ca3GT	Capana10g001978	17C3808 × 17C3807	GWAS，连锁图 Linkage map	639 F₂，280 pepper accessions	Liu et al.,2020
未熟果色（紫纹）Immature fruit color (purple stripe)	CaPs	CA10g11690	Chen12-4 × Z101-M	BSA	252 F₂	Li et al.,2023
	CaAn2	-	5226 × PI 159234	连锁图 Linkage map	295 F₂	Borovsky et al.,2004；Jung et al.,2019
	CaAN3	Dem.VI.00043895	品种Salad Piment Purple F₂群体 F₂ of cultivar ‘Salad Piment Purple’	BSR-Seq	243 F₂	Byun et al.,2022
成熟果色（滞绿） Mature fruit color (stay-green)	CaSGR1	Capana01g000359	CJ10-26-3-1 × TNX348/HJ10-1 × TNX348	BSA	419 F₂，371 F₂	Liu et al.,2023b
成熟果色（白色） Mature fruit color (white)	c1/PRR2	Capana01g000809	AC08-045 × AC08-201	遗传图谱，同源扩增Genetic map，homologous amplification	127 F₂	Jeong et al.,2020
成熟果色（桃红色） Mature fruit color (peach)	c1/PRR2	-	Habanero Orange × Habanero Peach	BSA	381 F₂	Lee et al.,2020b
成熟果色（橙色） Mature fruit color (orange)	CaOr/zeaxanthin epoxidase (ZEP)	-	SY × SO	遗传图谱 Genetic map	243 F₂	Lee et al.,2021
成熟果色（黄色） Mature fruit color (yellow)	Psy2	CA02g20350	MicroPep Red (MR) × MicroPep Yellow (MY)	同源扩增 Homologous amplification	281 F₂	Jang et al.,2020
辣味Pungency	Pun2/pamt¹¹	-	PI260433-np × Jeju	QTL	178 F₂	Yi et al.,2022
	CaKR1	CA10g18840	No.3341 × Habanero	连锁图 Linkage map	98 F₂	Koeda et al.,2019
辣椒素含量 Capsaicinoid	Capsaicinoid1 (Cap1)/ Pun3/MYB31	-	740 × CA1	QTL	150 F₂	Zhu et al.,2019a
	Pun3/CaMYB31	-	YCM334 × Tean	QTL	139 RILs	Han et al.,2019
类黄酮含量 Flavonoid content	Fc5.1/CaMYB12-like	Ca05g18430	Long Sweet (12) × AC2212 (P24)	QTL	230 F₂	Wu et al.,2023
CMV抗性 Resistance to CMV	qCmr2.1	CA02g19570	PBC688 × G29	BSA，QTL	289 F₂	Guo et al.,2017
辣椒卷叶病毒病抗性 Pepper yellow leaf curl virus resistance	pepy-1/ CaPelota	CA.PGAv.1.6.scaffold186.68/LOC107870304	BaPep-5 × BaPep-4	QTL	536 F₂	Koeda et al.,2021
	pepy-2/ CaRDR3a	Capana07g000167/Capana07g000168	PG1-1 × SCM334	QTL	217 F₂	Koeda et al.,2022
炭疽病抗性 Anthracnose resistance	AnRGO5	CA05g17730	77013 × PBC932	连锁图 Linkage map	432 BC₄S₁	Zhao et al.,2020
细菌性斑点病抗性Bacterial spot disease resistance	bs5 (Ca_cystm1)	-	CaT1 × CaFo	连锁图，染色体步移Linkage map，chromosome walking	4 662 F₂	Szabó et al.,2023
根节线虫抗性Root-knot nematode-resistant	Me3	Capana09g000163	HDA149 × 8214	GWAS，连锁图 Linkage map	2 322 F₂	Liu et al.,2023a
细胞核不育 Genic male sterile	ms1	CA05g06780	Commercial seeds	连锁图 Linkage map	1 118 F₂	Jeong et al.,2018
	msc-1	Capana02g002096	16C1369A × 16C909	BSA	510 F₂	Cheng et al.,2018
	msc-2	Capana05g000766	冀研16自交后代 Self-cross of Jiyan 16	BSA	89 F₂	Cheng et al.,2020b
	msc-3	Capana10g000198	MS × BB3	BSA	320 F₂	Dong et al.,2023
育性恢复 Restorer of fertility	Rf	CaPPR6	Chungyang A × Chungyang C	遗传图谱Genetic map	1 068 F₂	Jo et al.,2016
	Rf	Capana06g002967/Capana06g002969	138A × 138C	GWAS，遗传图谱Genetic map	255 F₂	Wu et al.,2019
	CaRf032	CA00g82510	77013A × IVF2014032	BSA	2 877 F₂	Zhang et al.,2020
	CaRf	Capana06g003028	BA3 × B702	BSA	317 F₂	Cheng et al.,2020a
	Rf	Capana06g002866	8A × R1	BSR-seq	72 F₂	Wei et al.,2020a
	CaRf_HZ	Capana06g002968	HZ1A × HZ1C	BSA	226 F₂	Nie et al.,2022
	Rf2	Capana06g000193	77013A × G164	BSA	517 F₂	Zhang et al.,2022

性状 Trait	遗传位点/基因 Locus/gene	注释基因 Annotated gene	材料 Material	定位方法 Mapping method	群体类型及大小 Population type and size	参考文献 Reference
下胚轴花青素积累Hypocotyl anthocyanin accumulation	CaTTG1	Capana03g001813	WT × Cha1	BSA	389 F₂，125 BC₁	Wang et al.,2023a
花药和茎花青素积累Anthres and stems anthocyanin accumulation	ayw	CA11g18550	14-Z4 × 14-Z5	连锁图，转录组测序Linkage map，transcriptome sequencing	253 F₂	Wang et al.,2023c
光敏黄叶突变体 Photosensitive leaf-yellowing	CaLY1	Capana09g000166	R24 × WT21	BSA	600 F₂	Yang et al.,2023
丛生花序Fasciculate inflorescence	-	Capana11g001832	L816 × CL74	BSA	1 148 F₂	Lv et al.,2019
果实朝向	UP12.1	Capana12g000985	BB3 × chiltepin	QTL	225 BC₁	Hu et al.,2021
Fruit orientation	UP	Capana12g000954	Ac1979 × Qiemen	GWAS	360 F₂	Cao et al.,2022
开花时间 Flowing time	APETALA2(AP2)	CA02g14540	USDA-early × USDA-late	BSA	230 F₂	Borovsky et al., 2015
	CaFFN	CA02g14540	B9431 × A145	BSA	297 F₂	Yuan et al.,2021
	APETALA2	Capana02g000700	740 × CA1	QTL	150 F₂	Zhu et al.,2019b
畸形果突变体 Malformed fruit mutant	maf-1(CaLFY)	CA03g3134	M1-62	BSA	95 M1	Tanaka et al.,2022
心室数Locule number	CaBRX	Capana01g004285	GS6 × Qiemen	QTL	200 F₂，186 F₃	Ma et al.,2022
果形Fruit shape	fs10/CaOFP20	Capana10g001230/CA10g10680	5226 × 1901	BSA，QTL	240 F₂	Borovsky et al.,2022
果实角质层合成 Fruit cuticle biosynthesis	CaFCD1	Capana12g002114	8214 × fcd1	BSA	782 F₂，138 BC₁	Wang et al.,2023b
辣椒成熟果实脱落性 The deciduous character of ripe fruit	S	Capana10g002229	BA3 × YNXML，BB3 × Chiltepin	QTL，连锁图Linkage map	155 F₂，254 BC₁ F₁，4 217 BC₁F₂	Hu et al.,2023
未熟果色（深绿）Immature fruit color (dark green)	pc10/CaGLK2	-	1154 × PI 152225	连锁图 Linkage map	182 F₂	Brand et al.,2012,2014
未熟果色（浅绿）Immature fruit color (light green)	pc1/CcLOL1	-	1154 × NIL 86-45	BSA，连锁图Linkage map	624 F₂	Borovsky et al.,2019
	CaPP2C35	Capana10g001701	17C827 × 17C685	BSA，GWAS	941 F₂，287 pepper accessions	Wu et al.,2022
未熟果色（浅黄）Immature fruit color (light yellow)	ly	Capana09g000680， Capana09g000671， Capana09g000715， Capana09g000692	CSJ009 × CSJ010	BSA，连锁图Linkage map	220 F₂	Song et al.,2022
未熟果色（紫色）Immature fruit color (purple)	Ca3GT	Capana10g001978	17C3808 × 17C3807	GWAS，连锁图 Linkage map	639 F₂，280 pepper accessions	Liu et al.,2020
未熟果色（紫纹）Immature fruit color (purple stripe)	CaPs	CA10g11690	Chen12-4 × Z101-M	BSA	252 F₂	Li et al.,2023
	CaAn2	-	5226 × PI 159234	连锁图 Linkage map	295 F₂	Borovsky et al.,2004；Jung et al.,2019
	CaAN3	Dem.VI.00043895	品种Salad Piment Purple F₂群体 F₂ of cultivar ‘Salad Piment Purple’	BSR-Seq	243 F₂	Byun et al.,2022
成熟果色（滞绿） Mature fruit color (stay-green)	CaSGR1	Capana01g000359	CJ10-26-3-1 × TNX348/HJ10-1 × TNX348	BSA	419 F₂，371 F₂	Liu et al.,2023b
成熟果色（白色） Mature fruit color (white)	c1/PRR2	Capana01g000809	AC08-045 × AC08-201	遗传图谱，同源扩增Genetic map，homologous amplification	127 F₂	Jeong et al.,2020
成熟果色（桃红色） Mature fruit color (peach)	c1/PRR2	-	Habanero Orange × Habanero Peach	BSA	381 F₂	Lee et al.,2020b
成熟果色（橙色） Mature fruit color (orange)	CaOr/zeaxanthin epoxidase (ZEP)	-	SY × SO	遗传图谱 Genetic map	243 F₂	Lee et al.,2021
成熟果色（黄色） Mature fruit color (yellow)	Psy2	CA02g20350	MicroPep Red (MR) × MicroPep Yellow (MY)	同源扩增 Homologous amplification	281 F₂	Jang et al.,2020
辣味Pungency	Pun2/pamt¹¹	-	PI260433-np × Jeju	QTL	178 F₂	Yi et al.,2022
	CaKR1	CA10g18840	No.3341 × Habanero	连锁图 Linkage map	98 F₂	Koeda et al.,2019
辣椒素含量 Capsaicinoid	Capsaicinoid1 (Cap1)/ Pun3/MYB31	-	740 × CA1	QTL	150 F₂	Zhu et al.,2019a
	Pun3/CaMYB31	-	YCM334 × Tean	QTL	139 RILs	Han et al.,2019
类黄酮含量 Flavonoid content	Fc5.1/CaMYB12-like	Ca05g18430	Long Sweet (12) × AC2212 (P24)	QTL	230 F₂	Wu et al.,2023
CMV抗性 Resistance to CMV	qCmr2.1	CA02g19570	PBC688 × G29	BSA，QTL	289 F₂	Guo et al.,2017
辣椒卷叶病毒病抗性 Pepper yellow leaf curl virus resistance	pepy-1/ CaPelota	CA.PGAv.1.6.scaffold186.68/LOC107870304	BaPep-5 × BaPep-4	QTL	536 F₂	Koeda et al.,2021
	pepy-2/ CaRDR3a	Capana07g000167/Capana07g000168	PG1-1 × SCM334	QTL	217 F₂	Koeda et al.,2022
炭疽病抗性 Anthracnose resistance	AnRGO5	CA05g17730	77013 × PBC932	连锁图 Linkage map	432 BC₄S₁	Zhao et al.,2020
细菌性斑点病抗性Bacterial spot disease resistance	bs5 (Ca_cystm1)	-	CaT1 × CaFo	连锁图，染色体步移Linkage map，chromosome walking	4 662 F₂	Szabó et al.,2023
根节线虫抗性Root-knot nematode-resistant	Me3	Capana09g000163	HDA149 × 8214	GWAS，连锁图 Linkage map	2 322 F₂	Liu et al.,2023a
细胞核不育 Genic male sterile	ms1	CA05g06780	Commercial seeds	连锁图 Linkage map	1 118 F₂	Jeong et al.,2018
	msc-1	Capana02g002096	16C1369A × 16C909	BSA	510 F₂	Cheng et al.,2018
	msc-2	Capana05g000766	冀研16自交后代 Self-cross of Jiyan 16	BSA	89 F₂	Cheng et al.,2020b
	msc-3	Capana10g000198	MS × BB3	BSA	320 F₂	Dong et al.,2023
育性恢复 Restorer of fertility	Rf	CaPPR6	Chungyang A × Chungyang C	遗传图谱Genetic map	1 068 F₂	Jo et al.,2016
	Rf	Capana06g002967/Capana06g002969	138A × 138C	GWAS，遗传图谱Genetic map	255 F₂	Wu et al.,2019
	CaRf032	CA00g82510	77013A × IVF2014032	BSA	2 877 F₂	Zhang et al.,2020
	CaRf	Capana06g003028	BA3 × B702	BSA	317 F₂	Cheng et al.,2020a
	Rf	Capana06g002866	8A × R1	BSR-seq	72 F₂	Wei et al.,2020a
	CaRf_HZ	Capana06g002968	HZ1A × HZ1C	BSA	226 F₂	Nie et al.,2022
	Rf2	Capana06g000193	77013A × G164	BSA	517 F₂	Zhang et al.,2022

性状 Trait	亲本材料 Parents	群体大小及类型Population size and type	染色体/连锁群 Chromosome/ linkage group	数量遗传位点 QTL	参考文献 Reference
株高Plant height	Perennial × Dempsey	120 RILs	2，4，6，7，8	PH-2，PH-4，PH-6，PH-7，PH-8.1，PH-8.2	Han et al.,2016
	California Wonder × LCA235	74 RILs	LG5	Qpht.iivr.5. 1	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	8	PH8.1	Lopez-Moreno et al.,2023
主茎长 Main stem length	Perennial × Dempsey	120 RILs	7，8，10，11，12	MSL-7，MSL-8.1，MSL-8.2，MSL-10，MSL-11，MSL-12	Han et al.,2016
主茎长 Main stem length	007EA × P1521	120 F₂	4，9，10，12	qMSL4，qMSL9，qMSL10，qMSL12	Wei et al.,2020b
侧枝数 Lateral branch number	Perennial × Dempsey	120 RILs	2	LBN-2.1， LBN-2.2	Han et al.,2016
侧枝数 Lateral branch number	007EA × P1521	120 F₂	4，9，10，11，12	qON4，qON9，qON10，qON11，qON12.1，qON12.2	Wei et al.,2020b
节间长 Internode length	Perennial × Dempsey	120 RILs	1，2，6，10	INL-1， INL-2，INL-6.1，INL-6.2，INL-10	Han et al.,2016
节间长 Internode length	007EA × P1521	120 F₂	3，6，11	qIL3，qIL6，qIL11	Wei et al.,2020b
生长习性Growth habit	Chiltepin × Puya	153 F_2︰3	1	GH1.1	Lopez-Moreno et al.,2023
茎色Stem colour	Perennial × Dempsey	120 RILs	2，4，7，9，11，12	SC-2，SC-4，SC-7，SC-9，SC-11，SC-12	Han et al.,2016
茎色Stem colour	Chiltepin × Puya	153 F_2︰3	10	SP10.1	Lopez-Moreno et al.,2023
花大小Flower size	Perennial × Dempsey	120 RILs	1，2，3，7，8，10	FLS-1，FLS-2，FLS-3.1，FLS-3.2，FLS-3.3，FLS-7，FLS-8，FLS-10	Han et al.,2016
叶长Leaf length	007EA × P1521	120 F₂	4，6	qLL4，qLL6	Wei et al.,2020b
叶宽Leaf width	007EA × P1521	120 F₂	4，9，10，12	qLW4，qLW9，qLW10.1，qLW10.2，qLW12	Wei et al.,2020b
每节花数Flower number per node	740 × CA1	150 F₂	2，7，10	Mf2.1，Mf7.1，Mf10.1	Zhu et al.,2019b
每节花数Flower number per node	TF68 × Habanero	85 RILs	1，2，7，11	TH-mf1，TH-mf2，TH-mf7，TH-mf11	Kim et al.,2022
始花节位 First flower node	PM702 × FS871	146 RILs	2，9，12	Ffn2.1， Ffn2.2，Ffn9，Ffn12	Zhang et al.,2019
花原基起始Initiation of flower primordia	BA3 × YNXML	154 F₂	2，7，10，11	Nle2.1，Nle2.2，Nle7.1，Nle10.1，Nle10.2，Nle11.1	Tan et al.,2015
开花时间 Flowering time	740 × CA1	150 F₂	2，6	Ft2.1，Ft6.1，Ft6.2	Zhu et al.,2019b
开花时间 Flowering time	007EA × P1521	120 F₂	3，7	qIBT3，qIBT7	Wei et al.,2020b
主茎节数Number of main stalk pitch	007EA × P1521	120 F₂	10	qNMS10	Wei et al.,2020b
花萼形状 Calyx shape	Perennial × Dempsey	120 RILs	1，3，5，9，11	CS-1.1，CS-1.2，CS-3.1~CS-3.5，CS-5，CS-9，CS-11	Han et al.,2016
雄蕊数Stamen number	Perennial × Dempsey	120 RILs	3，10，11	STN-3，STN-10，STN-11	Han et al.,2016
果实朝向 Fruit orientation	Perennial × Dempsey	120 RILs	1，4，12	F P-1，FP-4.1，FP-4.2，FP-12.1， FP-12.2，FP-12.3	Han et al.,2016
	Micropep × Jeju	219 F₂	12	CapUP	Solomon et al.,2021
	Perennial × Dempsey	77 RILs	12	CapUP	Solomon et al.,2021
	35001 (F) × 35009 (C)	174 RILs	12	CapUP	Solomon et al.,2021
	Chiltepin × Puya	153 F_2︰3	12	FO12.1	Lopez-Moreno et al.,2023
每株果数Number of fruits per plant	California Wonder × LCA235	74 RILs	LG2	Qnfp.iivr-2.1	Dwivedi et al.,2015
果实易落性Deciduous fruit	Chiltepin × Puya	153 F_2︰3	10	DF10.1	Lopez-Moreno et al.,2023
果质量Fruit weight	GS6 × Qiemen	200 F₂	2	ftw2.1	Ma et al.,2022
	16 L816 × 16 L15	148 RILs	2，4，6，7	qFWT2.1，qFWT4.1，qFWT6.1，qFWT7.1，qFWT7.2	Liu et al.,2022
	007EA × P1521	120 F₂	11	FW11	Wei et al.,2020b
	Perennial × Dempsey	120 RILs	1，2，3，6	FW-1，FW-2.1，FW-2.2，FW-3，FW-6FW-6.1	Han et al.,2016
	Perennial × Dempsey	120 RILs	7	PD_FWg7.1，PD_FWg7.2，PD_FWg7.3	Lee et al.,2020a
	California Wonder × LCA235	74 RILs	LG1，LG2，LG3	Qtofw.iivr-1.1， Qtofw.iivr-2.1， Qtofw.iivr-3.1	Dwivedi et al.,2015
	California Wonder × LCA235	74 RILs	LG2	Qtfw.iivr-2.1	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	2	FWE2.1	Lopez-Moreno et al.,2023
果长Fruit length	GS6 × Qiemen	200 F₂	2	ftl2.1	Ma et al.,2022
	16 L816 × 16 L15	148 RILs	3，7	qFL3.1，qFL7.1	Liu et al.,2022
	007EA × P1521	120 F₂	3	qFL3	Wei et al.,2020b
	Perennial × Dempsey	120 RILs	3，8	FL-3.1，FL-3.2，FL-3.3， FL-3.4，FL-3.5，FL-8	Han et al.,2016
	Perennial × Dempsey	120 RILs	2，3，5，9	PD_FL2，PD_FL3.1，PD_FL3.2，PD_FL5，PD_FL9	Lee et al.,2020a
	FL 201 × TC 07245	210 F₂	LG2	paufl2.1，paufl2.2	Arjun et al.,2018
	California Wonder × LCA235	74 RILs	LG3	Qfl.iivr.3.2， Qfl.iivr.3.4	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	2，4	FL2.1，FL4.1	Lopez-Moreno et al.,2023
果宽Fruit diameter	GS6 × Qiemen	200 F₂	2	ftd2.1	Ma et al.,2022
	Perennial × Dempsey	120 RILs	3，4，7	PD_FWd3，PD_FWd4，PD_FWd7.1，PD_FWd7.2	Lee et al.,2020a
	California Wonder × LCA235	74 RILs	LG2	Qfw.iivr-2.1	Dwivedi et al.,2015
	16 L816 × 16 L15	148 RILs	2，3，6，11	qFWD2.1，qFWD3.1，qFWD6.1，qFWD11.1	Liu et al.,2022
	Chiltepin × Puya	153 F_2︰3	1，2	FWI1.1，FWI2.1	Lopez-Moreno et al.,2023
果形Fruit shape	GS6 × Qiemen	200 F₂	1	fts1.1	Ma et al.,2022
	Perennial × Dempsey	120 RILs	3，8，11	FS-3.1，FS-3.2，FS-8，FS-11	Han et al.,2016
	Chiltepin × Puya	153 F_2︰3	2，4，12	FS2.1，FS4.1，FS12.1	Lopez-Moreno et al.,2023
未熟果面 Form of unripe fruit	Chiltepin × Puya	153 F_2︰3	2，12	FUF2.1，FUF12.1	Lopez-Moreno et al.,2023
果表面积Fruit area	Chiltepin × Puya	153 F_2︰3	2，4	FA2.1，FA4.1	Lopez-Moreno et al.,2023
果肉厚 Pericarp thickness	California Wonder × LCA235	74 RILs	LG2	Qpt.iivr-2.1	Dwivedi et al.,2015
心室数Locule number	GS6 × Qiemen	200 F₂	1	lcn1.1	Ma et al.,2022
果实种子Seedless fruit	Chiltepin × Puya	153 F_2︰3	1，6	SF1.1，SF6.1	Lopez-Moreno et al.,2023
未成熟果色 Immature fruit colour	Perennial × Dempsey	120 RILs	10，11，12	IFC-10.1，IFC-10.2，IFC-10.3，IFC-11.1，IFC-11.2，IFC-12	Han et al.,2016
	Long Sweet × AC2212	96 RILs	10	LA_BG-green10	Jang et al.,2022
	Chiltepin × Puya	153 F_2︰3	10	UFP10.1	Lopez-Moreno et al.,2023
未熟/成熟果色 Immature/ripe fruit colour	HNUCC22 × HNUCC16	200 F₂	1，6	qIMC-1，qIMC-2，qIMC-3，qIMC-4， qIMC-5，qIMC-6，qIMC-7，qIMC-8，qMC-1，qMC-2，qMC-3， qMC-4，qMC-5，qMC-6	Shu et al.,2023
成熟果色 Ripe fruit colour	16 L816 × 16 L15	148 RILs	6	qFC6.1	Liu et al.,2022
辣椒红素ASTA	Long Sweet × AC2212	96 RILs	10	LA_BG-ASTA10	Jang et al.,2022
辣椒红素ASTA	3501 (F) × 3509 (C)	176 RILs	4，8	FC17-ASTA4， FC17-ASTA8.1， FC17-ASTA8.2	Jang et al.,2022
辣椒红素Capsorubin	Long Sweet × AC2212	96 RILs	10	LA_BG-CSB10	Jang et al.,2022
α-胡萝卜素α-Carotene	Long Sweet × AC2212	96 RILs	1，10	LA_BG-aCAR1， LA_BG-aCAR10	Jang et al.,2022
类胡萝卜素 Carotenoids	3501 (F) × 3509 (C)	176 RILs	8，10	FC15-tcar8，FC15-tcar10	Jang et al.,2022
辣椒素Capsanthin	Long Sweet × AC2212	96 RILs	10	LA_BG-CST10	Jang et al.,2022
	3501 (F) × 3509 (C)	176 RILs	10	FC15-Cap10	Jang et al.,2022
	NB1 × Bhut Jolokia	175 F₂	LG3，LG6	qcap3.1 ， qcap6.1	Lee et al.,2016
	Habanero × Bhut Jolokia	87 F₂	6，11	HJ16-tcp6.1 ~ HJ16-tcp6.4， HJ17-tcp6， HJ17-tcp11	Park et al.,2019
	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-cap6.1，SJ-cap6.2	Park et al.,2019
二氢辣椒素 Dihydrocapsaicin	NB1 × Bhut Jolokia	175 F₂	LG2	qhdc2.1， qdhc2. 2	Lee et al.,2016
	SNU11-001 × Jolokia (SJ)	124 F₂	3，6	HJ16-dhc3， HJ16-dhc6.1， HJ16-dhc6.2	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	3，6	HJ16-dhc3， HJ16-dhc6.1， HJ16-dhc6.2	Park et al.,2019
	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-dhc6.1，SJ-dhc6.2，SJ-dhc6.3	Park et al.,2019
总辣椒素Total capsaicinoids	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-tcp6.1，SJ-tcp6.2	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	6	HJ16-qtlseq	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	6，11	HJ16-tcp6.1 ~ HJ16-tcp6.4， HJ17-tcp 6， HJ17-tcp11	Park et al.,2019
	Shishito × Takanotsume	104 F₂	3，7	Shql3，Shql7	Kondo et al.,2023
	PI260433-np × Jeju	178 F₂	3，9	Pun2_PJ_Gibbs_3.1~3.12，Pun2_PJ_Gibbs_9.1~Pun2_PJ_Gibbs_9.12	Yi et al.,2022
α-葡萄糖苷酶抑制剂活性α-Glucosidase inhibitory activity	M5 × AG13-3	96 F₂	1，5，9，11，12	qAGI1.1，qAGI5.1，qAGI5.2，qAGI9.1，qAGI11.1，qAGI12.1，qAGI12.2	Park et al.,2020
采后失水Post- harvest water loss	1154 × USDA162	213 BC₂	10	PWL10.1，PWL10.2	Popovsky-Sarid et al.,2017
小孢子胚胎发生 Microspore embryogenesis	PM702 × FS871	142 RILs	LG2，LG6，LG8，LG11，LG12	Me2.1， Me2.2，Me6.1，Me8.1，Me8.2，Me11.1，Me12.1	Bai et al.,2023
辣椒黄曲叶病毒病抗性Pepper yellow leaf curl virus resistance	Lp97 × ECW30R	150 F₂	1，7，12	peplcv-1，peplcv-7，peplcv-12	Siddique et al.,2022
辣椒黄曲叶病毒病抗性Pepper yellow leaf curl virus resistance	Habanero × GR1	100 F₂/40 F₃	4，11	Pepychr4，Pepychr11	Mori et al.,2022
CMV抗性 Resistance to CMV	A1 × 2602	174 F₃	5，10	cmvP-5.1，cmvP1-10.1	Eun et al.,2016
疫病抗性 Phytophthora capsici resistance	CM334 × ECW30R	188 RILs	1，2，4，5，7，8，11	QTL5.1， QTL5.2， QTL5.3，Kpc1，Jha8.1，Jha8.2，Jha11.1，Jha11.2，My11，E1My-2，E2Kpc-4	Siddique et al.,2019
	1287 × PI201234	150 F₂	5	CQPc5.1	Li et al.,2021
	CM334 × Early Jalapeno	66 RILs	5，8，9	QTL.Pc5，QTL.Pc8.1，QTL.Pc8.2，QTL.Pc9	Lozada et al.,2021a
炭疽病抗性 Anthracnose resistance	Bangchanag × PBC932	162 F₂	2	RA932g，RA932r	Mahasuk et al.,2016
	PBC80 × CA1316	146 F₂	4，9，12	RA80rP2，RA80rP3.1，RA80rHP1，RA80rP3.2，RA80rHP2	Mahasuk et al.,2016
	PBC80 × CA1316	97 RILs	3，4，8	RA80f6_g2， RA80f6_r1， RA80f6_g1	Kethom & Mongkolporn 2021
	77013 × PBC932	186 BC₁	3，5，7，12	AnR_GO3，AnR_GO5，AnR_GO7，AnR_GO10，AnR_GO12，AnR_GT5，AnR_GD5，AnR_GD10，AnR_GD12	Sun et al.,2015
白粉病抗性 Powdery mildew resistance	AR1 × TF68	188 F₅	2，5	Pm-2.1，Pm-5.1	Manivannan et al.,2021
青枯病抗性 Resistance to bacterial wilt	BVRC 25 × BVRC 1	440 F₂	10	qRRs-10.1	Du et al.,2019b
	品种Konesian Hot F₂群体 F₂ of cultivar ‘Konesian Hot’	96 F₂	5，6，7，8，9，10	Bwr6w-5.1，Bwr6w-6.1，Bwr6w-7.1，Bwr6w-7.2，Bwr6w-8.1，Bwr6w-9.1，Bwr6w-9.2，Bwr6w-10.1	Lee et al.,2022b
	KC352 × 14F6002-14	94 F₂	1	pBWR-1 QTL	Chae et al.,2022
抗蚜虫 Aphid resistance	PB2013046 × PB3017	176 F₂	2，4	Rmpas-1， Rmprp-1，Rmprp-2	Sun et al.,2020
	AC1979 × 4662	196 F₂	6	-	Maharijaya et al.,2015
	CGN16795 × CGN17219	11 F₂/5 F₃	6	-	van Haperen et al.,2021
根节线虫抗性Root-knot nematode-resistant	Yolo Wonder × Doux Long des Landes	130 F_2︰3	1，9	Minc-P1， Mare-P1， Mj av-P1， Mjav-P9	Barbary et al.,2016

性状 Trait	亲本材料 Parents	群体大小及类型Population size and type	染色体/连锁群 Chromosome/ linkage group	数量遗传位点 QTL	参考文献 Reference
株高Plant height	Perennial × Dempsey	120 RILs	2，4，6，7，8	PH-2，PH-4，PH-6，PH-7，PH-8.1，PH-8.2	Han et al.,2016
	California Wonder × LCA235	74 RILs	LG5	Qpht.iivr.5. 1	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	8	PH8.1	Lopez-Moreno et al.,2023
主茎长 Main stem length	Perennial × Dempsey	120 RILs	7，8，10，11，12	MSL-7，MSL-8.1，MSL-8.2，MSL-10，MSL-11，MSL-12	Han et al.,2016
主茎长 Main stem length	007EA × P1521	120 F₂	4，9，10，12	qMSL4，qMSL9，qMSL10，qMSL12	Wei et al.,2020b
侧枝数 Lateral branch number	Perennial × Dempsey	120 RILs	2	LBN-2.1， LBN-2.2	Han et al.,2016
侧枝数 Lateral branch number	007EA × P1521	120 F₂	4，9，10，11，12	qON4，qON9，qON10，qON11，qON12.1，qON12.2	Wei et al.,2020b
节间长 Internode length	Perennial × Dempsey	120 RILs	1，2，6，10	INL-1， INL-2，INL-6.1，INL-6.2，INL-10	Han et al.,2016
节间长 Internode length	007EA × P1521	120 F₂	3，6，11	qIL3，qIL6，qIL11	Wei et al.,2020b
生长习性Growth habit	Chiltepin × Puya	153 F_2︰3	1	GH1.1	Lopez-Moreno et al.,2023
茎色Stem colour	Perennial × Dempsey	120 RILs	2，4，7，9，11，12	SC-2，SC-4，SC-7，SC-9，SC-11，SC-12	Han et al.,2016
茎色Stem colour	Chiltepin × Puya	153 F_2︰3	10	SP10.1	Lopez-Moreno et al.,2023
花大小Flower size	Perennial × Dempsey	120 RILs	1，2，3，7，8，10	FLS-1，FLS-2，FLS-3.1，FLS-3.2，FLS-3.3，FLS-7，FLS-8，FLS-10	Han et al.,2016
叶长Leaf length	007EA × P1521	120 F₂	4，6	qLL4，qLL6	Wei et al.,2020b
叶宽Leaf width	007EA × P1521	120 F₂	4，9，10，12	qLW4，qLW9，qLW10.1，qLW10.2，qLW12	Wei et al.,2020b
每节花数Flower number per node	740 × CA1	150 F₂	2，7，10	Mf2.1，Mf7.1，Mf10.1	Zhu et al.,2019b
每节花数Flower number per node	TF68 × Habanero	85 RILs	1，2，7，11	TH-mf1，TH-mf2，TH-mf7，TH-mf11	Kim et al.,2022
始花节位 First flower node	PM702 × FS871	146 RILs	2，9，12	Ffn2.1， Ffn2.2，Ffn9，Ffn12	Zhang et al.,2019
花原基起始Initiation of flower primordia	BA3 × YNXML	154 F₂	2，7，10，11	Nle2.1，Nle2.2，Nle7.1，Nle10.1，Nle10.2，Nle11.1	Tan et al.,2015
开花时间 Flowering time	740 × CA1	150 F₂	2，6	Ft2.1，Ft6.1，Ft6.2	Zhu et al.,2019b
开花时间 Flowering time	007EA × P1521	120 F₂	3，7	qIBT3，qIBT7	Wei et al.,2020b
主茎节数Number of main stalk pitch	007EA × P1521	120 F₂	10	qNMS10	Wei et al.,2020b
花萼形状 Calyx shape	Perennial × Dempsey	120 RILs	1，3，5，9，11	CS-1.1，CS-1.2，CS-3.1~CS-3.5，CS-5，CS-9，CS-11	Han et al.,2016
雄蕊数Stamen number	Perennial × Dempsey	120 RILs	3，10，11	STN-3，STN-10，STN-11	Han et al.,2016
果实朝向 Fruit orientation	Perennial × Dempsey	120 RILs	1，4，12	F P-1，FP-4.1，FP-4.2，FP-12.1， FP-12.2，FP-12.3	Han et al.,2016
	Micropep × Jeju	219 F₂	12	CapUP	Solomon et al.,2021
	Perennial × Dempsey	77 RILs	12	CapUP	Solomon et al.,2021
	35001 (F) × 35009 (C)	174 RILs	12	CapUP	Solomon et al.,2021
	Chiltepin × Puya	153 F_2︰3	12	FO12.1	Lopez-Moreno et al.,2023
每株果数Number of fruits per plant	California Wonder × LCA235	74 RILs	LG2	Qnfp.iivr-2.1	Dwivedi et al.,2015
果实易落性Deciduous fruit	Chiltepin × Puya	153 F_2︰3	10	DF10.1	Lopez-Moreno et al.,2023
果质量Fruit weight	GS6 × Qiemen	200 F₂	2	ftw2.1	Ma et al.,2022
	16 L816 × 16 L15	148 RILs	2，4，6，7	qFWT2.1，qFWT4.1，qFWT6.1，qFWT7.1，qFWT7.2	Liu et al.,2022
	007EA × P1521	120 F₂	11	FW11	Wei et al.,2020b
	Perennial × Dempsey	120 RILs	1，2，3，6	FW-1，FW-2.1，FW-2.2，FW-3，FW-6FW-6.1	Han et al.,2016
	Perennial × Dempsey	120 RILs	7	PD_FWg7.1，PD_FWg7.2，PD_FWg7.3	Lee et al.,2020a
	California Wonder × LCA235	74 RILs	LG1，LG2，LG3	Qtofw.iivr-1.1， Qtofw.iivr-2.1， Qtofw.iivr-3.1	Dwivedi et al.,2015
	California Wonder × LCA235	74 RILs	LG2	Qtfw.iivr-2.1	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	2	FWE2.1	Lopez-Moreno et al.,2023
果长Fruit length	GS6 × Qiemen	200 F₂	2	ftl2.1	Ma et al.,2022
	16 L816 × 16 L15	148 RILs	3，7	qFL3.1，qFL7.1	Liu et al.,2022
	007EA × P1521	120 F₂	3	qFL3	Wei et al.,2020b
	Perennial × Dempsey	120 RILs	3，8	FL-3.1，FL-3.2，FL-3.3， FL-3.4，FL-3.5，FL-8	Han et al.,2016
	Perennial × Dempsey	120 RILs	2，3，5，9	PD_FL2，PD_FL3.1，PD_FL3.2，PD_FL5，PD_FL9	Lee et al.,2020a
	FL 201 × TC 07245	210 F₂	LG2	paufl2.1，paufl2.2	Arjun et al.,2018
	California Wonder × LCA235	74 RILs	LG3	Qfl.iivr.3.2， Qfl.iivr.3.4	Dwivedi et al.,2015
	Chiltepin × Puya	153 F_2︰3	2，4	FL2.1，FL4.1	Lopez-Moreno et al.,2023
果宽Fruit diameter	GS6 × Qiemen	200 F₂	2	ftd2.1	Ma et al.,2022
	Perennial × Dempsey	120 RILs	3，4，7	PD_FWd3，PD_FWd4，PD_FWd7.1，PD_FWd7.2	Lee et al.,2020a
	California Wonder × LCA235	74 RILs	LG2	Qfw.iivr-2.1	Dwivedi et al.,2015
	16 L816 × 16 L15	148 RILs	2，3，6，11	qFWD2.1，qFWD3.1，qFWD6.1，qFWD11.1	Liu et al.,2022
	Chiltepin × Puya	153 F_2︰3	1，2	FWI1.1，FWI2.1	Lopez-Moreno et al.,2023
果形Fruit shape	GS6 × Qiemen	200 F₂	1	fts1.1	Ma et al.,2022
	Perennial × Dempsey	120 RILs	3，8，11	FS-3.1，FS-3.2，FS-8，FS-11	Han et al.,2016
	Chiltepin × Puya	153 F_2︰3	2，4，12	FS2.1，FS4.1，FS12.1	Lopez-Moreno et al.,2023
未熟果面 Form of unripe fruit	Chiltepin × Puya	153 F_2︰3	2，12	FUF2.1，FUF12.1	Lopez-Moreno et al.,2023
果表面积Fruit area	Chiltepin × Puya	153 F_2︰3	2，4	FA2.1，FA4.1	Lopez-Moreno et al.,2023
果肉厚 Pericarp thickness	California Wonder × LCA235	74 RILs	LG2	Qpt.iivr-2.1	Dwivedi et al.,2015
心室数Locule number	GS6 × Qiemen	200 F₂	1	lcn1.1	Ma et al.,2022
果实种子Seedless fruit	Chiltepin × Puya	153 F_2︰3	1，6	SF1.1，SF6.1	Lopez-Moreno et al.,2023
未成熟果色 Immature fruit colour	Perennial × Dempsey	120 RILs	10，11，12	IFC-10.1，IFC-10.2，IFC-10.3，IFC-11.1，IFC-11.2，IFC-12	Han et al.,2016
	Long Sweet × AC2212	96 RILs	10	LA_BG-green10	Jang et al.,2022
	Chiltepin × Puya	153 F_2︰3	10	UFP10.1	Lopez-Moreno et al.,2023
未熟/成熟果色 Immature/ripe fruit colour	HNUCC22 × HNUCC16	200 F₂	1，6	qIMC-1，qIMC-2，qIMC-3，qIMC-4， qIMC-5，qIMC-6，qIMC-7，qIMC-8，qMC-1，qMC-2，qMC-3， qMC-4，qMC-5，qMC-6	Shu et al.,2023
成熟果色 Ripe fruit colour	16 L816 × 16 L15	148 RILs	6	qFC6.1	Liu et al.,2022
辣椒红素ASTA	Long Sweet × AC2212	96 RILs	10	LA_BG-ASTA10	Jang et al.,2022
辣椒红素ASTA	3501 (F) × 3509 (C)	176 RILs	4，8	FC17-ASTA4， FC17-ASTA8.1， FC17-ASTA8.2	Jang et al.,2022
辣椒红素Capsorubin	Long Sweet × AC2212	96 RILs	10	LA_BG-CSB10	Jang et al.,2022
α-胡萝卜素α-Carotene	Long Sweet × AC2212	96 RILs	1，10	LA_BG-aCAR1， LA_BG-aCAR10	Jang et al.,2022
类胡萝卜素 Carotenoids	3501 (F) × 3509 (C)	176 RILs	8，10	FC15-tcar8，FC15-tcar10	Jang et al.,2022
辣椒素Capsanthin	Long Sweet × AC2212	96 RILs	10	LA_BG-CST10	Jang et al.,2022
	3501 (F) × 3509 (C)	176 RILs	10	FC15-Cap10	Jang et al.,2022
	NB1 × Bhut Jolokia	175 F₂	LG3，LG6	qcap3.1 ， qcap6.1	Lee et al.,2016
	Habanero × Bhut Jolokia	87 F₂	6，11	HJ16-tcp6.1 ~ HJ16-tcp6.4， HJ17-tcp6， HJ17-tcp11	Park et al.,2019
	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-cap6.1，SJ-cap6.2	Park et al.,2019
二氢辣椒素 Dihydrocapsaicin	NB1 × Bhut Jolokia	175 F₂	LG2	qhdc2.1， qdhc2. 2	Lee et al.,2016
	SNU11-001 × Jolokia (SJ)	124 F₂	3，6	HJ16-dhc3， HJ16-dhc6.1， HJ16-dhc6.2	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	3，6	HJ16-dhc3， HJ16-dhc6.1， HJ16-dhc6.2	Park et al.,2019
	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-dhc6.1，SJ-dhc6.2，SJ-dhc6.3	Park et al.,2019
总辣椒素Total capsaicinoids	SNU11-001 × Jolokia (SJ)	124 F₂	6	SJ-tcp6.1，SJ-tcp6.2	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	6	HJ16-qtlseq	Park et al.,2019
	Habanero × Bhut Jolokia	87 F₂	6，11	HJ16-tcp6.1 ~ HJ16-tcp6.4， HJ17-tcp 6， HJ17-tcp11	Park et al.,2019
	Shishito × Takanotsume	104 F₂	3，7	Shql3，Shql7	Kondo et al.,2023
	PI260433-np × Jeju	178 F₂	3，9	Pun2_PJ_Gibbs_3.1~3.12，Pun2_PJ_Gibbs_9.1~Pun2_PJ_Gibbs_9.12	Yi et al.,2022
α-葡萄糖苷酶抑制剂活性α-Glucosidase inhibitory activity	M5 × AG13-3	96 F₂	1，5，9，11，12	qAGI1.1，qAGI5.1，qAGI5.2，qAGI9.1，qAGI11.1，qAGI12.1，qAGI12.2	Park et al.,2020
采后失水Post- harvest water loss	1154 × USDA162	213 BC₂	10	PWL10.1，PWL10.2	Popovsky-Sarid et al.,2017
小孢子胚胎发生 Microspore embryogenesis	PM702 × FS871	142 RILs	LG2，LG6，LG8，LG11，LG12	Me2.1， Me2.2，Me6.1，Me8.1，Me8.2，Me11.1，Me12.1	Bai et al.,2023
辣椒黄曲叶病毒病抗性Pepper yellow leaf curl virus resistance	Lp97 × ECW30R	150 F₂	1，7，12	peplcv-1，peplcv-7，peplcv-12	Siddique et al.,2022
辣椒黄曲叶病毒病抗性Pepper yellow leaf curl virus resistance	Habanero × GR1	100 F₂/40 F₃	4，11	Pepychr4，Pepychr11	Mori et al.,2022
CMV抗性 Resistance to CMV	A1 × 2602	174 F₃	5，10	cmvP-5.1，cmvP1-10.1	Eun et al.,2016
疫病抗性 Phytophthora capsici resistance	CM334 × ECW30R	188 RILs	1，2，4，5，7，8，11	QTL5.1， QTL5.2， QTL5.3，Kpc1，Jha8.1，Jha8.2，Jha11.1，Jha11.2，My11，E1My-2，E2Kpc-4	Siddique et al.,2019
	1287 × PI201234	150 F₂	5	CQPc5.1	Li et al.,2021
	CM334 × Early Jalapeno	66 RILs	5，8，9	QTL.Pc5，QTL.Pc8.1，QTL.Pc8.2，QTL.Pc9	Lozada et al.,2021a
炭疽病抗性 Anthracnose resistance	Bangchanag × PBC932	162 F₂	2	RA932g，RA932r	Mahasuk et al.,2016
	PBC80 × CA1316	146 F₂	4，9，12	RA80rP2，RA80rP3.1，RA80rHP1，RA80rP3.2，RA80rHP2	Mahasuk et al.,2016
	PBC80 × CA1316	97 RILs	3，4，8	RA80f6_g2， RA80f6_r1， RA80f6_g1	Kethom & Mongkolporn 2021
	77013 × PBC932	186 BC₁	3，5，7，12	AnR_GO3，AnR_GO5，AnR_GO7，AnR_GO10，AnR_GO12，AnR_GT5，AnR_GD5，AnR_GD10，AnR_GD12	Sun et al.,2015
白粉病抗性 Powdery mildew resistance	AR1 × TF68	188 F₅	2，5	Pm-2.1，Pm-5.1	Manivannan et al.,2021
青枯病抗性 Resistance to bacterial wilt	BVRC 25 × BVRC 1	440 F₂	10	qRRs-10.1	Du et al.,2019b
	品种Konesian Hot F₂群体 F₂ of cultivar ‘Konesian Hot’	96 F₂	5，6，7，8，9，10	Bwr6w-5.1，Bwr6w-6.1，Bwr6w-7.1，Bwr6w-7.2，Bwr6w-8.1，Bwr6w-9.1，Bwr6w-9.2，Bwr6w-10.1	Lee et al.,2022b
	KC352 × 14F6002-14	94 F₂	1	pBWR-1 QTL	Chae et al.,2022
抗蚜虫 Aphid resistance	PB2013046 × PB3017	176 F₂	2，4	Rmpas-1， Rmprp-1，Rmprp-2	Sun et al.,2020
	AC1979 × 4662	196 F₂	6	-	Maharijaya et al.,2015
	CGN16795 × CGN17219	11 F₂/5 F₃	6	-	van Haperen et al.,2021
根节线虫抗性Root-knot nematode-resistant	Yolo Wonder × Doux Long des Landes	130 F_2︰3	1，9	Minc-P1， Mare-P1， Mj av-P1， Mjav-P9	Barbary et al.,2016

性状 Trait	群体大小 Number of individuals	种 Species	标记类型 Marker type	总标记 Total number of markers	显著关联标记数Number of significant marker-trait associations	染色体 Chromosome	参考文献 Reference
每节花数 Number of flowers per axil	287	C. annuum，C. baccatum， C. chinense，C. frutescens	SLAF-SNP	594 429	12	1，4，5，6，7，9，10，11，12	Wu et al.,2019
	2 059	C. annuum	GBS-SNP	26 566	4	6	Tripodi et al.,2021
	276	C. annuum，C. chinense， C. frutescens，C. spp.	GBS-SNP	156 589	28	1，2，3，5，6，7，10，11，12	Kim et al.,2022
花梗位置Pedicel position	2 059	C. annuum	GBS-SNP	26 566	6	2，12	Tripodi et al.,2021
株高Plant height	350	C. annuum	GBS-SNP，Indel	10 195	-	9	McLeod et al.,2023
果方向Fruit position	230	C. annuum	GBS-SNP	187 966	52	3，5，12	Lee et al.,2020a
	256	C. annuum，C. baccatum， C. chinense，C. frutescens	GBS-SNP	176 951	14	12	Solomon et al.,2021
	311	C. annuum	GBS-SNP	165 864	-	12	Cao et al.,2022
单株产量Total fruit weight	350	C. annuum	GBS-SNP，Indel	10 195	-	0	McLeod et al.,2023
单株果数Total fruit number	350	C. annuum	GBS-SNP，Indel	10 195	-	2，9	McLeod et al.,2023
果实质量Fruit weight	96	C. annuum	SSR	176	11	1，2，4，5，8，9，10	Nimmakayala et al.,2014
	94	C. annuum	GBS-SNP	7 331	61	1，2，3，4，5，6，8，9，10，11，12	Nimmakayala et al.,2016
	230	C. annuum	GBS-SNP	187 966	101	1，2，4，6，7，8，9，10，11，12	Lee et al.,2020a
	350	C. annuum	GBS-SNP，Indel	10 195	-	0，2	McLeod et al.,2023
果长Fruit length	230	C. annuum	GBS-SNP	187 966	8	3，4，5，7，11	Lee et al.,2020a
果长Fruit length	350	C. annuum	GBS-SNP，Indel	10 195	-	3，5，10	McLeod et al.,2023
果宽Fruit width	287	C. annuum，C. baccatum， C. chinense，C. frutescens	SLAF-SNP	594 429	3	1，8，12	Wu et al.,2019
果宽Fruit width	230	C. annuum	GBS-SNP	187 966	281	7，9，12	Lee et al.,2020a
椭圆或扁球形果Fruit shaped oblate or fasciated	350	C. annuum	GBS-SNP，Indel	10 195	-	10	McLeod et al.,2023
果形指数Fruit shape index	244	C. chinense	GBS-SNP	43 081	9	6，7，11，12	Nimmakayala et al.,2021
	220	C. annuum	GBS-SNP	746 000	8	3，10，11 1，2，3，4，6	Colonna et al.,2019
	271	-	GBS-SNP	165	9	12	Du et.al.,2019a
	2 059	C. annuum	GBS-SNP	26 566	6	10，11	Tripodi et al.,2021
	311	C. annuum	GBS-SNP	165 864	-	3	Cao et al.,2022
	350	C. annuum	GBS-SNP，Indel	10 195	-	3，5，9，10	McLeod et al.,2023
	287	C. annuum，C. baccatum， C. chinense，C. frutescens	SLAF-SNP	594 429	4	1，8，11，12	Wu et al.,2019
果肉厚 Pericarp thickness	230	C. annuum	GBS-SNP	187 966	9	4，6，7，11，12	Lee et al.,2020a
	350	C. annuum	GBS-SNP，Indel	10 195	-	9，10	McLeod et al.,2023
	244	C. chinense	GBS-SNP	43 081	12	1，2，5，6，10	Nimmakayala et al.,2021
心室数 Locule number	287	C. annuum，C. baccatum， C. chinense，C. frutescens	SLAF-SNP	594 429	-	10	Wu et al.,2022
未成熟果色 Immature fruit color	280	C. annuum，C. baccatum， C. chinense，C. frutescens	SLAF-SNP	594 429	102	10	Liu et al.,2020
	350	C. annuum	GBS-SNP，Indel	10 195	-	1	McLeod et al.,2023
	311	C. annuum	GBS-SNP	165 864	-	2	Cao et al.,2022
辣椒素有无Presence or absence of capsaicinoids	350	C. annuum	GBS-SNP，Indel	10 195	-	3	McLeod et al.,2023
辣椒素有无Presence or absence of capsaicinoids	208	C. annuum，C. chinense， C. frutescens	GBS-SNP	109 610	99	1，3，6，10，11	Han et al.,2018
辣椒素含量 Capsaicinoid content	96	C. annuum	SSR	176	5	1	Nimmakayala et al.,2014
	94	C. annuum	GBS-SNP	7 331	86	1，2，3，5，6，9，10，11	Nimmakayala et al.,2016
	342	C. annuum，C. baccatum， C. chacoense，C. chinense， C. frutescens	GBS-SNP	45 481	29	1，2，3，4，6，7，8，10，12	Ro et al.,2022
疫病抗性 Phytophthora capsici resistance	352	C. annuum	GBS-SNP	507 713	117	5，7，11	Siddique et al.,2019
	237	C. annuum	GBS-SNP	3 329 373	785	5	Zhang et al.,2023
	256	C. annuum	GBS-SNP	10 307	6	4，6，9，12	Tamisier et al.,2020
PVY抗性PVY resistance	256	C. annuum	GBS-SNP	10 308	2	9	Tamisier et al.,2022

Advances in Genetic Mapping and Candidate Gene Analysis of Important Traits in Pepper（Capsicum spp.）

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