Research Progress on Endogenous Banana Streak Virus

doi:10.16420/j.issn.0513-353x.2022-0659

Acta Horticulturae Sinica ›› 2023, Vol. 50 ›› Issue (10): 2288-2296.doi: 10.16420/j.issn.0513-353x.2022-0659

• Review • Previous Articles Next Articles

Research Progress on Endogenous Banana Streak Virus

RAO Xueqin, LI Huaping^*()

Guangdong Province Key Laboratory of Microbial Signals and Disease Control，College of Plant Protection，South China Agricultural University，Guangzhou 510642，China

Received:2023-04-10 Revised:2023-06-02 Online:2023-10-25 Published:2023-10-31

Abstract

Abstract:

This review summarized the related research on the endogenous banana streak virus（eBSV）and briefly described the reactivation mechanism of homologous recombination，regulation mechanism mainly through epigenetic mechanism and genetic mechanism，and biological significance of eBSV. The research on eBSV was prospected，which would provide a reference for the study of co-evolution and interaction of banana and banana streak virus.

Key words: Musa, banana streak virus, endogenous pararetrovirus, endogenous banana streak virus

RAO Xueqin, LI Huaping. Research Progress on Endogenous Banana Streak Virus[J]. Acta Horticulturae Sinica, 2023, 50(10): 2288-2296.

References 50

[1]	Bertsch C, Beuve M, Dolja V V, Wirth M, Pelsy F, Herrbach E, Lemaire O. 2009. Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance. Biology Direct, 4:21. doi: 10.1186/1745-6150-4-21 pmid: 19558678
[2]	Bhat A I, Hohn T, Selvarajan R. 2016. Badnaviruses:the current global scenario. Viruses, 8 (6):177. doi: 10.3390/v8060177 URL
[3]	Chabannes M, Baurens F C, Duroy P O, Bocs S, Vernerey M S, Rodier-Goud M, Barbe V, Gayral P, Iskra-Caruana M L. 2013. Three infectious viral species lying in wait in the banana genome. Journal of Virology, 87:8624-8637. doi: 10.1128/JVI.00899-13 pmid: 23720724
[4]	Chabannes M, Gabriel M, Aksa A, Galzi S, Dufayard J F, Iskra-Caruana M L, Muller E. 2021. Badnaviruses and banana genomes:a long association sheds light on Musa phylogeny and origin. Molecular Plant Pathology, 22 (2):216-230. doi: 10.1111/mpp.13019 pmid: 33231927
[5]	Chabannes M, Iskra-Caruana M L. 2013. Endogenous pararetroviruses—a reservoir of virus infection in plants. Current Opinion In Virology, 3:615-620. doi: 10.1016/j.coviro.2013.08.012 pmid: 24035682
[6]	Cheng C, Lockhart B E L, Olszewski N E. 1996. The ORF I and II proteins of commelina yellow mottle virus are virion-associated. Virology, 223:263-271. pmid: 8806562
[7]	Chen S, Liu R, Koyanagi K O, Kishima Y. 2014. Rice genomes recorded ancient pararetrovirus activities:virus genealogy and multiple origins of endogenization during rice speciation. Virology, 471:141-152.
[8]	Côte F X, Galzi S, Folliot M, Lamagnère Y, Teycheney P Y, Iskra-Caruana M L. 2010. Micropropagation by tissue culture triggers differential expression of infectious endogenous banana streak virus sequences(eBSV)present in the B genome of natural and synthetic interspecific banana plantains. Molecular Plant Pathology, 11:137-144. doi: 10.1111/mpp.2010.11.issue-1 URL
[9]	Dallot S, Accuna P, Rivera C, Ramirez P, Côte F, Lockhart B E L, Caruana M L. 2001. Evidence that the proliferation stage of micropropagation procedure is determinant in the expression of banana streak virus integrated into the genome of the FHIA21 hybrid(Musa AAAB). Archives of Virology, 146:2179-2190. pmid: 11765919
[10]	D’Hont A, Denoeud F, Aury J M, Baurens F C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain M R, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci A M, Weissenbach J, Ruiz M, Glaszmann J C, Quétier F, Yahiaoui N, Wincker P. 2012. The banana(Musa acuminata)genome and the evolution of monocotyledonous plants. Nature, 488:213-217. doi: 10.1038/nature11241
[11]	Daniells J W, Geering A D W, Bryde N J, Thomas J E. 2001. The effect of banana streak virus on the growth and yield of dessert bananas in tropical Australia. Annals of Applied Biology, 139:51-60. doi: 10.1111/aab.2001.139.issue-1 URL
[12]	Diaz-Lara A, Mosier N J, Stevens K, Keller K E, Martin R R. 2020. Evidence of rubus yellow net virus integration into the red raspberry genome. Cytogenetic and Genome Research, 160 (6):329-334. doi: 10.1159/000509845 pmid: 32683370
[13]	Duroy P O, Perrier X, Laboureau N, Jacquemoud-Collet J P, Iskra-Caruana M L. 2016. How endogenous plant pararetroviruses shed light on Musa evolution. Annals of Botany, 117 (4):625-641. doi: 10.1093/aob/mcw011 URL
[14]	Gayral P, Blondin L, Guidolin O, Carreel F, Hippolyte I, Perrier X, Iskra-Caruana M L. 2010. Evolution of endogenous sequences of banana streak virus:What can we learn from banana(Musa sp.) evolution? Journal of Virology, 84 (14):7346-7359. doi: 10.1128/JVI.00401-10 URL
[15]	Gayral P, Iskra-Caruana M L. 2009. Phylogeny of banana streak virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.). Journal of Molecular Evolution, 69:65-80. doi: 10.1007/s00239-009-9253-2 URL
[16]	Gayral P, Noa-Carrazana J C, Lescot M, Lheureux F, Lockhart B E L, Matsumoto T, Piffanelli P, Iskra-Caruana M L. 2008. A single banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus. Journal of Virology, 82 (13):6697-6710. doi: 10.1128/JVI.00212-08 pmid: 18417582
[17]	Geering A D W, Olszewski N E, Harper G, Lockhart B E L, Hull R, Thomas J E. 2005. Banana contains a diverse array of endogenous badnaviruses. Journal of General Virology, 86 (Pt 2):511-520. doi: 10.1099/vir.0.80261-0 pmid: 15659772
[18]	Gregor W, Mette M F, Staginnus C, Matzke M A, Matzke A J. 2004. A distinct endogenous pararetrovirus family in Nicotiana tomentosiformis,a diploid progenitor of polyploid tobacco. Plant Physiology, 134:1191-1199. doi: 10.1104/pp.103.031112 URL
[19]	Harper G, Hull R, Lockhart B, Olszewski N. 2002. Viral sequences integrated in to plant genomes. Annual Review of Phytopathology, 40:119-136. pmid: 12147756
[20]	Harper G, Hart D, Moult S, Hull R, Geering A, Thomas J. 2005. The diversity of banana streak virus in Uganda. Archives of Virology, 150:2407-2420. doi: 10.1007/s00705-005-0610-1 pmid: 16096705
[21]	Iskra-Caruana M L, Baurens F C, Gayral P, Chabannes M. 2010. A four partner plant-virus interaction:enemies can also come from within. Molecular Plant Microbe Interactions, 23 (11):1394-1402. doi: 10.1094/MPMI-05-10-0107 URL
[22]	Iskra-Caruana M L, Chabannes M, Duroy P O, Muller E. 2014a. A possible scenario for the evolution of banana streak virus in banana. Virus Research, 186:155-162. doi: 10.1016/j.virusres.2014.01.005 URL
[23]	Iskra-Caruana M L, Duroy P O, Chabannes M, Muller E. 2014b. The common evolutionary history of badnaviruses and banana. Infection Genetics and Evolution, 21:83-89. doi: 10.1016/j.meegid.2013.10.013 URL
[24]	Jacquot E, Hagen L S, Jacquemond M, Yot P. 1996. The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein. Virology, 225:191-195. doi: 10.1006/viro.1996.0587 pmid: 8918546
[25]	James A P, Geijskes R J, Dale J L, Harding R M. 2011. Molecular characterization of six badnavirus species associated with leaf streak disease of banana in East Africa. Annals of Applied Biology, 158:346-353. doi: 10.1111/aab.2011.158.issue-3 URL
[26]	James A P, Kidanemariam D B, Hamill S D, Dale J L, Harding R M. 2021. Infectivity of an infectious clone of banana streak CA virus in A-genome bananas(Musa acuminata ssp.). Viruses, 13 (6):1071. doi: 10.3390/v13061071 URL
[27]	Jaufeerally-Fakim Y, Khorugdharry A, Harper G. 2006. Genetic variants of banana streak virus in Mauritius. Virus Research, 115:91-98. doi: 10.1016/j.virusres.2005.06.015 pmid: 16143419
[28]	Kuan C P, Tsai C H, Tseng C S, Yang T C. 2022. Development of a bead-based assay for detection of three banana-infecting viruses. Peer Journal, 10:e13409. doi: 10.7717/peerj.13409 URL
[29]	Kunii M, Kanda M, Nagano H, Uyeda I, Kishima Y, Sano Y. 2004. Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome:implications for integration and evolution. BMC Genomics, 5:80. doi: 10.1186/1471-2164-5-80
[30]	Kuriyama K, Tabara M, Moriyama H, Kanazawa A, Koiwa H, Takahashi H, Fukuhara T. 2020. Disturbance of floral colour pattern by activation of an endogenous pararetrovirus,petunia vein clearing virus,in aged petunia plants. The Plant Journal, 103 (2):497-511. doi: 10.1111/tpj.v103.2 URL
[31]	Lescot M, Piffanelli P, Ciampi A Y, Ruiz M, Blanc G, Leebens-Mack J, da Silva F R, Santos C M, D'Hont A, Garsmeur O, Vilarinhos A D, Kanamori H, Matsumoto T, Ronning C M, Cheung F, Haas B J, Althoff R, Arbogast T, Hine E, Pappas G J Jr, Sasaki T, Souza M T Jr, Miller R N, Glaszmann J C, Town C D. 2008. Insights into the Musa genome:syntenic relationships to rice and between Musa species. BMC Genomics, 9:58. doi: 10.1186/1471-2164-9-58
[32]	Lockhart B E, Menke J, Dahal G, Olszewski N E. 2000. Characterization and genomic analysis of tobacco vein clearing virus,a plant pararetrovirus that is transmitted vertically and related to sequences integrated in the host genome. Journal of General Virology, 81:1579 -1585. pmid: 10811941
[33]	Lheureux F, Carreel F, Jenny C, Lockhart B E, Iskra-Caruana M L. 2003. Identification of genetic markers linked to banana streak disease expression in inter-specific Musa hybrids. Theoretical and Applied Genetics, 106:594 - 598. pmid: 12595986
[34]	Lheureux F, Laboureau N, Muller E, Lockhart B E, Iskra-Caruana M L. 2007. Molecular characterization of banana streak acuminata Vietnam virus isolated from Musa acuminata siamea(banana cultivar). Archives of Virology, 152 (7):1409 -1416. doi: 10.1007/s00705-007-0946-9 pmid: 17431738
[35]	Matzke M, Gregor W, Mette M F, Aufstatz W, Kanno T, Jakowitsch J, Matzke A J M. 2004. Endogenous pararetroviruses of allotetraploid Nicotiana tabacum and its diploid progenitors,N. sylvestris and N. tomentosiformis. Biological Journal of the Linnean Society, 82:627-638. doi: 10.1111/j.1095-8312.2004.00347.x URL
[36]	Mette M F, Kanno T, Aufsatz W, Jakowitsch J, van der Winden J, Matzke M A, Matzke A J. 2002. Endogenous viral sequences and their potential contribution to heritable virus resistance in plants. EMBO Journal, 21:461-469. doi: 10.1093/emboj/21.3.461 pmid: 11823438
[37]	Meyer J B, Kasdorf G G F, Nel L H, Pietersen G. 2008. Transmission of activated episomal banana streak OL(baDNA)virus(BSOLV) to cv. Williams banana(Musa sp.) by three mealybug species. Plant Disease, 92:1158-1163. doi: 10.1094/PDIS-92-8-1158 pmid: 30769482
[38]	Muller E, Ullah I, Dunwell J M, Daymond A J, Richardson M, Allainguillaume J, Wetten A. 2021. Identification and distribution of novel badnaviral sequences integrated in the genome of cacao(Theobroma cacao). Scientific Reports, 11 (1):8270. doi: 10.1038/s41598-021-87690-1
[39]	Ndowora T, Dahal G, LaFleur D, Harper G, Hull R, Olszewski N E, Lockhart B. 1999. Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences. Virology, 255:214-220. doi: 10.1006/viro.1998.9582 pmid: 10069946
[40]	Noreen F, Akbergenov R, Hohn T, Richert-Poggeler K R. 2007. Distinct expression of endogenous petunia vein clearing virus and the DNA transposon dTph 1 in two Petunia hybrida lines is correlated with differences in histone modification and siRNA production. The Plant Journal, 50 (2):219-229. doi: 10.1111/tpj.2007.50.issue-2 URL
[41]	Ricciuti E, Laboureau N, Noumbissié G, Chabannes M, Sukhikh N, Pooggin M M, Iskra-Caruana M L. 2021. Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids. Journal of General Virology, 102 (11):0.001670.
[42]	Richert-Poggeler K R, Noreen F, Schwarzacher T, Harper G, Hohn T. 2003. Induction of infectious petunia vein clearing(pararetro)virus from endogenous provirus in petunia. EMBO Journal, 22:4836-4845. doi: 10.1093/emboj/cdg443 pmid: 12970195
[43]	Schmidt N, Seibt K M, Weber B, Schwarzacher T, Schmidt T, Heitkam T. 2021. Broken,silent,and in hiding:tamed endogenous pararetroviruses escape elimination from the genome of sugar beet(Beta vulgaris). Annals of Botany, 128 (3):281-299. doi: 10.1093/aob/mcab042 pmid: 33729490
[44]	Silva G, Bömer M, Turaki A A, Nkere C K, Kumar P L, Seal S E. 2022. Homing in on endogenous badnaviral elements:development of multiplex PCR-DGGE for detection and rapid identification of badnavirus sequences in yam germplasm. Frontiers in Plant Science, 13:846989. doi: 10.3389/fpls.2022.846989 URL
[45]	Staginnus C, Gregor W, Mette M F, Teo C H, Borroto-Fernández E G, Machado M L, Matzke M, Schwarzacher T. 2007. Endogenous pararetroviral sequences in tomato(Solanum lycopersicum)and related species. BMC Plant Biology, 7:24. doi: 10.1186/1471-2229-7-24 URL
[46]	Staginnus C, Iskra-Caruana M L, Lockhart B, Hohn T, Richert-Pöggeler K R. 2009. Suggestions for a nomenclature of endogenous pararetroviral sequences in plants. Archives of Virology, 154:1189-1193. doi: 10.1007/s00705-009-0412-y pmid: 19521659
[47]	Staginnus C, Richert-Poggeler K R. 2006. Endogenous pararetroviruses:two-faced travelers in the plant genome. Trends Plant Science, 11:485-491. doi: 10.1016/j.tplants.2006.08.008 URL
[48]	Tripathi J N, Ntui V O, Ron M, Muiruri S K, Britt A, Tripathi L. 2019. CRISPR/Cas9 editing of endogenous banana streak virus in the B genome of Musa spp. overcomes a major challenge in banana breeding. Communications Biology, 2:46. doi: 10.1038/s42003-019-0288-7 pmid: 31924917
[49]	Yu H, Wang X, Lu Z, Xu Y, Deng X, Xu Q. 2019. Endogenous pararetrovirus sequences are widely present in Citrinae genomes. Virus Research, 262:48-53. doi: 10.1016/j.virusres.2018.05.018 URL
[50]	Zhang X, Henderson I R, Lu C, Green P J, Jacobsen S E. 2007. Role of RNA polymerase IV in plant small RNA metabolism. Proceedings of the National Academy of Sciences, 104:4536-4541.

Research Progress on Endogenous Banana Streak Virus

RichHTML

PDF

Knowledge

Abstract

Cite this article

share this article

References 50

Related Articles 2

Recommended Articles

Metrics

Comments

[1]	CHEN Xiu, RAO Xue-Qin, RUAN Xiao-Lei, LIU Fu-Xiu, LI Hua-Ping. Prokaryotic Expression and Antiserum Preparation of Functional Domain of Banana streak virus Coat Protein Gene [J]. ACTA HORTICULTURAE SINICA, 2013, 40(12): 2401-2408.
[2]	TAN Xiao-yong;RUAN Xiao-lei;WU Li-ting;ZHAI Guo-hui;and LI Hua-ping. Development of a Multiplex PCR Protocol for the Detection of Three Viruses in Banana [J]. ACTA HORTICULTURAE SINICA, 2010, 37(5): 829-834.