Genome Wide Identification and Expression Analysis of the bZIP Gene Family in Pepper

doi:10.16420/j.issn.0513-353x.2018-0033

ACTA HORTICULTURAE SINICA ›› 2018, Vol. 45 ›› Issue (8): 1535-1550.doi: 10.16420/j.issn.0513-353x.2018-0033

• Research Papers • Previous Articles Next Articles

Genome Wide Identification and Expression Analysis of the bZIP Gene Family in Pepper

WEI Ruimin，ZHENG Jingyuan，LIU Feng，MA Yanqing，LI Xuefeng，YANG Bozhi，ZOU Xuexiao，XIE Lingling*，and DAI Xiongze*

1Institute of Vegetable，Hunan Academy of Agricultural Sciences，Changsha 410125，China；2College of Longping，Graduate School of Hunan University，Changsha 410125，China

Online:2018-08-25 Published:2018-08-25

Abstract

Abstract: In this study，we systematically identified genes from the genome of pepper and elucidated their phylogenetic relationships by bioinformatics. Based on the pepper whole genome sequence，CabZIP gene family chromosome location，conserved motif，gene structure，tissue-specific transcription patterns and response to ABA stress were analyzed. The results showed that a total of 54 CabZIP genes were identified and they were distributed on 11 chromosomes. The pepper bZIP gene family were divided into 10 groups and each of group included a range of genes. This gene family contained 0–11 introns. The CabZIP gene family exhibited distinct expression pattern in different tissues. The CabZIP gene could be repressed or activated by ABA treatment. Those results will provide a foundation for further functional research on CabZIP genes in pepper.

Key words: pepper, bZIP gene family, gene expression, phylogeny analysis

CLC Number:

S 641.3

WEI Ruimin，ZHENG Jingyuan，LIU Feng，MA Yanqing，LI Xuefeng，YANG Bozhi，ZOU Xuexiao，XIE Lingling*，and DAI Xiongze*. Genome Wide Identification and Expression Analysis of the bZIP Gene Family in Pepper[J]. ACTA HORTICULTURAE SINICA, 2018, 45(8): 1535-1550.

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Genome Wide Identification and Expression Analysis of the bZIP Gene Family in Pepper

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