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ACTA HORTICULTURAE SINICA ›› 2020, Vol. 47 ›› Issue (5): 963-973.doi: 10.16420/j.issn.0513-353x.2019-0759

• Research Notes • Previous Articles     Next Articles

Identification of CRK Gene Family in Pear and Its Members in Response to Signals of Valsa pyri

LIU He,DUO Hu,ZHAO Dan,SUN E,MA Fupeng,MA Chunling,and ZUO Cunwu*   

  1. Department of Horticulture,Gansu Agricultural University,Lanzhou 730070,China
  • Online:2020-05-25 Published:2020-05-25

Abstract: The Cysteine-rich receptor like kinases(CRKs)took important regulatory roles during plant:PF01657)and kinase(Pfam:PF00069),a genome-wide identification of CRKs in pear(Pyrus spp.)genome were performed. In addition,the physical and chemical characteristics,evolutionary characteristics,subcellular location,chromosomal distribution,cis-acting regulatory element(cis-element)and expression patterns were analyzed. A total of 32 CRKs were obtained,with the amino acid size from 440 to 1 217 aa,molecular weight of 48.90–137.02 kD,and isoelectric point of 5.31–8.59. CRKs were predicted mainly located on plasma membrane. According to evolutionary analysis,a total of 156 CRKs from 5 plant species,including pear,Arabidopsis thaliana,apple,tomato and rice,could be divided into 6 subgroups. Pear CRKs were mainly distributed in subgroup Ⅳ,Ⅴand Ⅵ. In pear CRKs,5 tandem duplicated gene clusters,including 20 members,were found. For all the family members,a large number of cis-elements responsive to hormone and stress were discovered in promote regions. After inoculated Valsa canker pathogen Valsa pyri(Vp),8 and 10 CRKs were differentially expressed in Pyrus betulifolia (resistant)and‘Zaosu’pear(Pyrus bretschneideri,susceptible),expression of 6 members were changed in both two germplasm. Among these,Pbr001477.1 and Pbr000205.4 were up-regulated in two germplasm,but other genes exhibited distinct expressions between two germplasm.

Key words: pear, CRK, gene family, Valsa canker, bioinformatic analysis

CLC Number: