Genome-wide Analysis of SAUR Gene Family in Citrus

doi:10.16420/j.issn.0513-353x.2019-0581

ACTA HORTICULTURAE SINICA ›› 2020, Vol. 47 ›› Issue (1): 23-40.doi: 10.16420/j.issn.0513-353x.2019-0581

• Research Papers • Previous Articles Next Articles

Genome-wide Analysis of SAUR Gene Family in Citrus

WANG Fusheng1,2，YU Hong1，HU Zhou1，GUAN Delong3，ZHANG Pan1，ZHU Shiping1,2，and ZHAO Xiaochun1,2,*

1Citrus Research Institute，Southwest University/Chinese Academy of Agricultural Sciences，Chongqing 400712，China；2National Citrus Engineering Research Center，Chongqing 400712，China；3College of Life Sciences，Shaanxi Normal University，Xi’an 710119，China

Online:2020-01-25 Published:2020-01-25

Abstract

Abstract: Small auxin up-regulated RNA（SAUR）gene family plays a vital role in plant growth and development. In this study，a total of 70，69，58 and 62 SAUR homologous genes were identified from the genomes of Citrus clementina，C. medica，C. reticulata‘Mangshan’and C. maxima，respectively. Chromosomal location analysis revealed that the distribution of SAUR genes on chromosome is not uniform. Most of SAUR genes appeared as tandem duplication clustered on chromosome. The tandem duplication and segmental duplication could be the consequence of SAUR genes expansion. Most of citrus SAUR genes do not contain intron，and possess highly conserved four SAUR-specific motifs. The phylogenetic analysis displayed that 629 SAUR genes from 5 species were classified into 9 groups. In each group，the majority of species-specific SAUR genes have a close genetic relationship. cis-elements analysis revealed that light responsiveness，transcription factor（TF）binding，hormone responsiveness，wound responsiveness，low temperature responsiveness，zein metabolism and flavonoid biosynthesis related elements exist in upstream sequences of CclSAUR genes. The results of qRT-PCR analysis indicated that the expression of most of CclSAUR genes clearly responded to the exogenous IAA and cold temperature treatments. This study presented an overview information of constitution，structure and basic biological function of SAUR gene family in different citrus species.

Key words: Citrus, small auxin up-regulated RNA, gene expression, genome-wide analysis

CLC Number:

S 666

WANG Fusheng1,2，YU Hong1，HU Zhou1，GUAN Delong3，ZHANG Pan1，ZHU Shiping1,2，and ZHAO Xiaochun1,2,*. Genome-wide Analysis of SAUR Gene Family in Citrus[J]. ACTA HORTICULTURAE SINICA, 2020, 47(1): 23-40.

[1]	WANG Xiaochen, NIE Ziye, LIU Xianju, DUAN Wei, FAN Peige, and LIANG Zhenchang, . Effects of Abscisic Acid on Monoterpene Synthesis in‘Jingxiangyu’Grape Berries [J]. Acta Horticulturae Sinica, 2023, 50(2): 237-249.
[2]	YE Zimao, SHEN Wanxia, LIU Mengyu, WANG Tong, ZHANG Xiaonan, YU Xin, LIU Xiaofeng, and ZHAO Xiaochun, . Effect of R2R3-MYB Transcription Factor CitMYB21 on Flavonoids Biosynthesis in Citrus [J]. Acta Horticulturae Sinica, 2023, 50(2): 250-264.
[3]	ZHAI Hanhan, ZHAI Yujie, TIAN Yi, ZHANG Ye, YANG Li, WEN Zhiliang, CHEN Haijiang. Genome-wide Identification of Peach SAUR Gene Family and Characterization of PpSAUR5 Gene [J]. Acta Horticulturae Sinica, 2023, 50(1): 1-14.
[4]	JIANG Jingdong, WEI Zhuangmin, WANG Nan, ZHU Chenqiao, YE Junli, XIE Zongzhou, DENG Xiuxin, CHAI Lijun. Exploitation and Identification of Tetraploid Resources of Hongkong Kumquat（Fortunella hindsii） [J]. Acta Horticulturae Sinica, 2023, 50(1): 27-35.
[5]	DU Yuling, YANG Fan, ZHAO Juan, LIU Shuqi, LONG Chaoan. Antifungal Mechanisms of Sodium New Houttuyfonate Against Penicillium digitatum [J]. Acta Horticulturae Sinica, 2023, 50(1): 145-152.
[6]	LI Zhenxi, PAN Ruixuan, XU Meirong, ZHENG Zheng, DENG Xiaoling. Development of Duplex Real-time PCR Assay of‘Candidatus Liberibacter asiatics’ [J]. Acta Horticulturae Sinica, 2023, 50(1): 188-196.
[7]	ZHU Kaijie, ZHANG Zhehui, CAO Lixin, XIANG Shunde, YE Junli, XIE Zongzhou, CHAI Lijun, and DENG Xiuxin, . A New Brown Late-ripening Navel Orange Cultivar‘Zongcheng’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 41-42.
[8]	ZHU Shiping, WEN Rongzhong, WANG Yuanyuan, and ZENG Yang. A New Very Late Ripening Citrus Variety‘Jinlegan’ [J]. Acta Horticulturae Sinica, 2022, 49(S1): 43-44.
[9]	ZHENG Lin, WANG Shuai, LIU Yunuo, DU Meixia, PENG Aihong, HE Yongrui, CHEN Shanchun, ZOU Xiuping. Gene Cloning and Expression Analysis of NAC Gene in Citrus in Response to Huanglongbing [J]. Acta Horticulturae Sinica, 2022, 49(7): 1441-1457.
[10]	ZHANG Qiuyue, LIU Changlai, YU Xiaojing, YANG Jiading, FENG Chaonian. Screening of Reference Genes for Differentially Expressed Genes in Pyrus betulaefolia Plant Under Salt Stress by qRT-PCR [J]. Acta Horticulturae Sinica, 2022, 49(7): 1557-1570.
[11]	YANG Haijian, ZHANG Yungui, ZHOU Xinzhi. A New Citrus Cultivar‘Yungui Cui Cheng’ [J]. Acta Horticulturae Sinica, 2022, 49(7): 1611-1612.
[12]	ZHANG Kai, MA Mingying, WANG Ping, LI Yi, JIN Yan, SHENG Ling, DENG Ziniu, MA Xianfeng. Identification of HSP20 Family Genes in Citrus and Their Expression in Pathogen Infection Responses Citrus Canker [J]. Acta Horticulturae Sinica, 2022, 49(6): 1213-1232.
[13]	LI Wenting, LI Cuixiao, LIN Xiaoqing, ZHENG Yongqin, ZHENG Zheng, DENG Xiaoling. Population Genetic Structure of Xanthomonas citri pv. citri in Guangdong Province Based on the STR Locus [J]. Acta Horticulturae Sinica, 2022, 49(6): 1233-1246.
[14]	MA Mingying, HAO Chenxing, ZHANG Kai, XIAO Guihua, SU Hanying, WEN Kang, DENG Ziniu, MA Xianfeng. CsSWEET2a Promotes the Infection of Xanthomonas citri subsp. citri [J]. Acta Horticulturae Sinica, 2022, 49(6): 1247-1260.
[15]	JIA Yamin, XU Hao, HU Wenlang, WANG Yuwen, YE Xin, CHEN Lisong, LI Yan, GUO Jiuxin. Magnesium Deficiency Altered in Iron Absorption,Subcellular Distribution,and Chemical Forms in Citrus Seedlings [J]. Acta Horticulturae Sinica, 2022, 49(5): 973-983.

Genome-wide Analysis of SAUR Gene Family in Citrus

PDF

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 15

Recommended Articles

Metrics

Comments