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园艺学报 ›› 2007, Vol. 34 ›› Issue (2): 355-360.

• 蔬菜 • 上一篇    下一篇

黄瓜抗病基因类似序列( RGA) 的同源性分析和Southern鉴定

丁国华1,2;池春玉2;周秀艳1;秦智伟1*   

  1. (1东北农业大学园艺学院, 哈尔滨150030; 2哈尔滨师范大学阿城学院, 哈尔滨150301)
  • 收稿日期:2006-11-21 修回日期:2007-01-22 出版日期:2007-04-25 发布日期:2007-04-25
  • 通讯作者: 秦智伟

Southern Identification and Homology Analysis of the Resistance GeneAna log in Cucumis sativus L.

DING Guo-hua1,2,CHI Chun-yu2,ZHOU Xiu-yan1,and QIN Zhi-wei1*   

  1. (1Horticulture College, Northeast Agricultural University, Harbin 150030, China; 2Acheng College, Harbin Normal University,Harbin 150301, China)
  • Received:2006-11-21 Revised:2007-01-22 Online:2007-04-25 Published:2007-04-25
  • Contact: QIN Zhi-wei

摘要: 使用ClustalW和DNAMAN 3.0分析了本实验室克隆的15个黄瓜抗病基因类似序列(RGA)
之间以及与烟草的N 基因、亚麻的L6基因和拟南芥的RPS2基因之间的同源性, 并对这些RGA进行了PCR和Southern验证与分析。结果表明: 15个黄瓜RGA中, 核苷酸序列同源性最高的是CsRGA2、CsRGA4和CsRGA5, 其次是CsRGA6、CsRGA7、CsRGA8和CsRGA9, CsRGA1和CsRGA3也存在较高的同源性; 其余的RGA同源性较低。在氨基酸序列上也表现了相同的特征。与NL6RPS2等抗病基因的产物之间同源性最高46% , 最低22%。根据核苷酸序列设计了15对特异引物, 用PCR方法验证了所有黄瓜RGA的存在, 其中CsRGA3在黄瓜品种间表现出多态性。利用特异引物PCR方法合成了15个黄瓜RGA的地高辛探针, 与EcoRⅤ酶解的黄瓜‘215’、‘129’和‘L18’的基因组DNA进行Southern杂交, 证实了各
个RGA在基因组上的存在, 同时发现, CsRGA9、CsRGA11~CsRGA15都是多拷贝,CsRGA3是单拷贝, 其余为双拷贝。

关键词: 黄瓜, 抗病基因类似序列, 同源性, Southern杂交

Abstract: The homology among fifteen RGAs of cucumber cloned in authorsplaboratory and the homology between the RGAs and N gene from tobacco, and L6 gene from flax, and RPS2 gene from A rabidopsiswas analyzed using ClustalW and DNAMAN 310 p rogram. The fifteen RGAs were identified by PCR and Southern hybridization. The results showed that the highest homology of nucleotide sequence existed between CsRGA2,CsRGA4 and CsRGA5. Higher homology existed between CsRGA6, CsRGA7, CsRGA8 and CsRGA9, also existed between CsRGA1 and CsRGA3, Less homology existed in the other RGAs. The amino acid sequence homologies of the products translated from the RGAs were also similar to the above. The highest homology,46% , and the lowest homology, 22% , between the RGAs and three novel disease resistance genes, N, L6 and RPS2, were exhibited. The RGAswere identified using PCR with fifteen pairs of special p rimers based on the nucleotide sequence of the RGAs. CsRGA3 showed polymorphism in cucumber varieties. The fifteen digoxin (D IG) labeling probe, which produced by performing special primer PCR, hybridized with genomic DNA of 215, 129 and L18, digested by EcoRⅤ, using Southern blotmethod. The existence of the RGAs in cucumber genome was certified. CsRGA9, CsRGA11-CsRGA15 had multi copies, respectively, CsRGA3 had single copy, the others had two copies.

Key words: Cucumber, Cucumis sativus L., RGA, Homology, Southern hybridization

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