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园艺学报 ›› 2019, Vol. 46 ›› Issue (3): 508-518.doi: 10.16420/j.issn.0513-353x.2018-0097

• 研究论文 • 上一篇    下一篇

利用siRNA高通量测序和RT-PCR技术鉴定引起茄子斑驳紫花病的病毒种类

柴阿丽,陈利达,曹金强,康华军,石延霞,谢学文,李宝聚*   

  1. (中国农业科学院蔬菜花卉研究所,北京100081)
  • 出版日期:2019-03-25 发布日期:2019-03-25

Identification of Viruses Causing Eggplant Purple Mottle Flower Disease by siRNA High-throughput Sequencing and RT-PCR detection

CHAI Ali,CHEN Lida,CAO Jinqiang,KANG Huajun,SHI Yanxia,XIE Xuewen,and LI Baoju*   

  1. (Institute of Vegetables and Flowers,Chinese Academy of Agricultural Sciences,Beijing 100081,China)
  • Online:2019-03-25 Published:2019-03-25

摘要: 为了明确引起茄子斑驳紫花病的病毒种类,利用小干扰RNA(siRNA)高通量测序技术,结合生物信息学方法寻找茄子样本中的病毒序列,发现存在烟草轻型绿花叶病毒(Tobacco mild green mosaic virus,TMGMV)和番茄斑驳花叶病毒(Tomato mottle mosaic virus,ToMMV)。为了验证该结果,对待测样品中TMGMV和ToMMV的外壳蛋白(coat protein,CP)全长基因进行RT-PCR扩增和系统进化分析,分别得到500 bp的TMGMV-CP和482 bp的ToMMV-CP特异性条带,与GenBank中TMGMV和ToMMV序列相似性分别达到98% ~ 100%和100%,说明待测样品中确实存在TMGMV和ToMMV。对采自山东、河南、辽宁、河北等地的23份疑似斑驳紫花病茄子样品,分别采用特异性引物524-F/R和ToMMV-F/R进行检测。结果显示,所有样品中均含有TMGMV,20份样品中含有ToMMV,复合侵染检出率为86.96%。对茄子、番茄和辣椒幼苗的致病性检测显示,接种后茄子花表现出与田间相同的症状,茄子、番茄和辣椒的叶片表现典型的病毒侵染症状,在接种发病组织中检测到病毒ToMMV和TMGMV。结果表明,茄子斑驳紫花病样中鉴定出TMGMV和ToMMV两种病毒。

关键词: 茄子斑驳紫花病, siRNA高通量测序, 分子鉴定, 烟草轻型绿花叶病毒, 番茄斑驳花叶病毒

Abstract: To identify the virus causing eggplant purple mottle flower disease,high-throughput sequencing of small interfering RNA(siRNA)was performed with eggplant samples,and then the RNA virus was screened with bioinformatics methods. Results showed that genomic information of Tobacco mild green mosaic virus(TMGMV)and Tomato mottle mosaic virus(ToMMV)were detected in eggplant samples. To confirm the results,total RNAs were analyzed by reverse transcription(RT)-PCR to amplify the full-length coat protein(CP)gene of 500 bp TMGMV and 482 bp ToMMV. Blast analysis confirmed the identity of the virus,showing 98%–100% and 100% similarity to TMGMV-CP and ToMMV-CP sequence,respectively. Twenty-three suspected mottled eggplant samples from Shandong,Henan,Liaoning,and Hebei provinces were tested with specific primers 524-F/R and ToMMV-F/R. The expected 500 bp TMGMV-CP fragment was amplified from all 23 samples,and 289 bp ToMMV-CP fragment was amplified from 20 samples. In pathogenicity test,all leaves of inoculated eggplant,tomato and pepper,and flowers of eggplant showed the same symptoms as the field. The results showed that TMGMV and ToMMV were identified in the eggplant mottled purple flower disease.

Key words: eggplant purple mottle virus disease, siRNA high-throughput sequencing, molecular identification, Tobacco mild green mosaic virus, Tomato mottle mosaic virus

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