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园艺学报 ›› 2012, Vol. 39 ›› Issue (10): 2023-2032.

• 研究报告 • 上一篇    下一篇

基于SSR 标记构建平菇栽培品种核心样本方法的探讨

李慧, 陈强, 黄晨阳, 谢宝贵, 张金霞   

  1. (1 福建农林大学菌物研究中心,福州 350002;2 中国农业科学院农业资源与农业区划研究所,农业部农业微生物资源收集与保藏重点实验室,北京 100081)
  • 出版日期:2012-10-25 发布日期:2012-10-25

A Method for Establishing Core Collection of Pleurotus ostreatus Cultivated in China Based on SSR Markers

 LI  Hui, CHEN  Qiang, HUANG  Chen-Yang, XIE  Bao-Gui, ZHANG  Jin-Xia   

  1. (1Mycological Research Center,Fujian Agriculture and Forestry University,Fuzhou 350002,China;2Institute of Agricultural Resources and Regional Planning,Chinese Academy of Agricultural Sciences;Key Laboratory of Microbial Resources,Ministry of Agriculture,Beijing 100081,China)
  • Online:2012-10-25 Published:2012-10-25

摘要: 为了探讨基于DNA分子标记构建平菇栽培品种核心样本的方法,基于48个平菇栽培菌株的11个SSR位点,根据遗传距离进行UPGMA聚类,采用位点优先取样策略,结合表型性状,在不同SSR等位基因保留比例(100%、95%、90%、85%、80%)水平上构建核心样本,进而确定取样量。采用稀有等位基因保留比例以及对Nei’s基因多样度和Shannon’s信息指数进行t检验,评价核心样本的代表性,并且根据表型保留比例以及极差、均值和标准差的符合率对核心样本的代表性作进一步确认。结果表明:采用位点优先取样策略,在等位基因保留比例为95%的水平上构建的核心样本能够以最小的样本量最大限度地代表原种质的遗传多样性。

关键词: 平菇, 核心样本, 取样方法, 分子标记, 表型, 遗传多样性

Abstract: The method for establishing core collection of Pleurotus ostreatus cultivated in China based on the molecular markers data was proposed. For 11 SSR makers of 48 P. ostreatus cultivars,an allele preferred sampling strategy was used to establish P. ostreatus core collection using UPGMA cluster method according to the genetic distances and the phenotypic traits. The size of each core collection was determined when the ratio of SSR alleles retained was maintained at 100%,95%,90%,85% and 80% respectively. The ratio of SSR rare alleles retained and t-test of Nei’s gene diversity and Shannon’s information index were used to evaluate representativeness of the core collections. This was followed by analyses of the phenotypic representativeness of the core collections,including the coincidence rates of range,mean,and standard deviation between the core collections. Our analyses identified that the allele preferred sampling strategy could be used to establish the most representative core collection with the least

Key words: Pleurotus ostreatus, core collection, sampling method, molecular makers, phenotype, genetic diversity

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