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园艺学报 ›› 2012, Vol. 39 ›› Issue (3): 509-515.

• 蔬菜 • 上一篇    下一篇

芋花叶病毒的RT-PCR检测及外壳蛋白基因序列分析

施世明1,王国平1,2,徐文兴1,王利平1,洪  霓1,2,*   

  1. 1华中农业大学植物科技学院,湖北省作物病害监测与安全控制重点实验室,武汉 430070;2华中农业大学,农业微生物学国家重点实验室,武汉430070
  • 收稿日期:2011-09-19 修回日期:2011-11-24 出版日期:2012-03-25 发布日期:2012-03-25
  • 通讯作者: 洪 霓 E-mail:whni@mail.hzau.edu.cn

The Detection of Dasheen mosaic virus by RT-PCR and Sequence Analysis of Its Coat Protein Gene

SHI Shi-ming1,WANG Guo-ping1,2,XU Wen-xing1,WANG Li-ping1,and HONG Ni1,2,*   

  1. 1College of Plant Science and Technology,Key Lab of Crop Disease Monitoring and Safety Control in Hubei,Huazhong Agricultural University,Wuhan 430070,China;2National Key Lab of Agromicrobiology,Huazhong Agricultural University,Wuhan 430070,China
  • Received:2011-09-19 Revised:2011-11-24 Online:2012-03-25 Published:2012-03-25
  • Contact: HONG Ni E-mail:whni@mail.hzau.edu.cn

摘要: 采用RT-PCR技术对采自中国湖北、浙江和山东的91份芋[Colocasia esculenta(L.)Schott]样品的芋花叶病毒(Dasheen mosaic virus,DsMV)进行了检测,检出率为26.4%。对其中14个DsMV分离物的317 bp扩增产物(为外壳蛋白基因的一部分)序列分析的结果显示,各分离物内的核苷酸变异相对较低,而分离物间存在较大的分子变异,相似性为68.3% ~ 97.8%。对来自湖北和浙江的2个DsMV分离物DsMV-SCS和DsMV-JH的外壳蛋白基因(coat protein gene,cp)进行了测序,全长分别为951 bp和987 bp,二者cp核苷酸和氨基酸序列相似性分别为79.0%和82.3%,与已报道DsMV的cp核苷酸和氨基酸序列相似性分别为73.0% ~ 92.1%和74.8% ~ 98.2%,在构建的系统发育树上聚在两个不同的簇,各DsMV分离物的系统进化关系与其寄主和地理来源无显著相关性。

关键词: 芋, 芋花叶病毒, RT-PCR, 外壳蛋白基因, 序列分析芋花叶病毒, RT-PCR, 外壳蛋白基因, 序列分析

Abstract: Reverse transcription PCR(RT-PCR)was used for the detection of Dasheen mosaic virus(DsMV)in taro[Colocasia esculenta(L.)Schott] from Hubei,Zhejiang and Shandong Provinces. Results revealed that the average viral infection frequency in 91 collected taro samples was 26.4%. RT-PCR products of 317 bp(covering partial coat protein gene)from 14 isolates were sequenced. Results showed that the obtained sequences had high intra-isolate nucleotide similarities,but inter-isolate nucleotide similarities were varied from 68.3% to 97.8%. The cp genes of two DsMV isolates named DsMV-SCS and DsMV-JH were sequenced,and their sizes were 951 bp and 987 bp,respectively. Their cp genes shared similarities of 79.0% at nucleotide(nt)level and 82.3% at amino acid(aa)level to each other and similarities of 73.0%–92.1% at nt level and 74.8%–98.2% at aa level to reported cp sequences of DsMV,respectively. The phylogenetic trees constructed based on nucleotide and deduced amino acid sequences of the cp of DsMV showed that isolates DsMV-SCS and DsMV-JH clustered into two different groups. There was no obvious correlation between phylogenetic positions and host or geographical origins of different DsMV isolates.

Key words: taro, Dasheen mosaic virus, RT-PCR, coat protein gene, sequence analysis