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园艺学报 ›› 2020, Vol. 47 ›› Issue (11): 2194-2206.doi: 10.16420/j.issn.0513-353x.2019-0659

• 研究报告 • 上一篇    下一篇

森林草莓6mA甲基转移酶基因鉴定及功能分析

徐 昇,张 鑫,刘德才,顾婷婷*   

  1. 南京农业大学园艺学院,南京 210095
  • 出版日期:2020-11-25 发布日期:2020-12-07
  • 基金资助:
    国家自然科学基金项目(31672123):江苏高校品牌专业建设工程资助项目(PPZY2015B156)

Identification and Functional Analysis of N6-Adenine Methylation(6mA)Methyltransferase Genes in Fragaria vesca

XU Sheng,ZHANG Xin,LIU Decai,and GU Tingting*   

  1. College of Horticulture,Nanjing Agricultural University,Nanjing 210095,China
  • Online:2020-11-25 Published:2020-12-07

摘要: 通过生物信息学手段,鉴定出森林草莓(Fragaria vesca)基因组中两类可能的6mA甲基转移酶基因5个(3个MT-A70、2个DAMT基因)。对细菌、真菌、动物和植物中的6mA甲基转移酶基因的系统进化分析及染色体定位表明,森林草莓MT-A70基因可分为3个亚家族,且在动、植物分化前就已经存在:两个DAMT基因由物种特异的串联重复产生,且结构变化快,推测其在进化历程中功能发生了分化。转录组数据及实时定量荧光PCR分析显示,各个基因均具有时空表达特异性和非生物胁迫响应。其中1个DAMT基因表达量在果实中较高且随果实成熟上调,推测可能参与调控果实成熟。此外,这5个基因在冷胁迫下表达水平有不同程度下调:而在热胁迫下各基因表达量变化显著不同。由此推测6mA甲基转移酶基因可能参与了森林草莓的生长发育和对冷、热胁迫的响应。

关键词: 森林草莓, N6–腺嘌呤甲基化(6mA), N6–腺嘌呤甲基转移酶, 系统进化, 逆境胁迫

Abstract: DNA methylation on the sixth position of the purine ring in adenine[N6-methyladenine (6mA)]is an epigenetic modification widely present in both eukaryotes and prokaryotes,but our understanding in its function in plants is limited. We applied bioinformatic approaches to identify and analyze the two classes of putative N6-adenine DNA methyltransferase genes(three MT-A70 and two DAMT genes)in woodland strawberry(Fragaria vesca). Phylogenetic analysis and chromosome positioning on those 6mA DNA methyltransferase genes from bacteria,fungi,animals and plants showed that F. vesca MT-A70 genes could be classified into three subfamilies,which existed before the diversification of plants and animals. Two DAMT genes were generated by a species-specific tandem duplication,and the proteins structure changed rapidly. It is speculated that the function of the DAMT protein has diversified during the evolutionary process. The analysis on transcriptome data suggested that each gene had specific spatiotemporal expression and was responsive to cold and heat stresses. The expression of one DAMT gene was relatively higher in fruits and was up-regulated as fruit matured,indicating that it may participate in the regulation of fruit ripening. In addition,the expression levels of the five 6mA methyltransferase genes were significantly changed under cold and heat stresses. Thus,it is speculated that MT-A70 and DAMT genes may be involved in the growth and development of F. vesca and its responses to cold and heat stresses.

Key words: Fragaria vesca, N6-adenine methylation, N6-adenine DNA methyltransferase genes, phylogenetic evolution, abiotic stress

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